Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,369,404 – 11,369,540 |
Length | 136 |
Max. P | 0.961354 |
Location | 11,369,404 – 11,369,500 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 93.49 |
Mean single sequence MFE | -23.18 |
Consensus MFE | -18.74 |
Energy contribution | -18.62 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.14 |
Mean z-score | -1.60 |
Structure conservation index | 0.81 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.752339 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11369404 96 - 22224390 ACUCCAUUUAGGUGGUAUGGCAAAGAUUGAGGAAACACACAUUUGUGGUUUAUUUAGCUGUACAUGUUUUCGAUUCUCUGAAUUGCCAAUCUUCAA ...((((....))))..((((((.....(((((.....((((.((..(((.....)))..)).))))......)))))....))))))........ ( -20.90) >DroSec_CAF1 30084 95 - 1 ACUCCAUUUAGGUGGUAUGGCAAAGAAUGUGGAAAUA-ACAUUUGUGGUUUAUUUAGCUGUACAUGUUUCCGAUUCUCUGAAUUGCCAAUCUUCAA ...((((....))))..(((((((((((.(((((...-((((.((..(((.....)))..)).)))))))))))))).....))))))........ ( -23.80) >DroSim_CAF1 11330 95 - 1 ACUCCAUUUAGGUGGCAUGGCAAAGAAUGAGGAAAUA-ACAUUUGUGGUUUAUUUAGCUGUACAUGUUUCCGAUUCUCUGAAUUGCCAAUCUUCAA .........((((((((...((.(((((..((((...-((((.((..(((.....)))..)).)))))))).))))).))...)))).)))).... ( -24.80) >DroEre_CAF1 33850 94 - 1 ACUCCAUUUAGGUUGUAUGGCAAAGAAUGAGGAAAC--ACAUUUGUGGUUUAUUUGGCUGUACAUGUUUCCGAUUCUCUGAGUUGCCAAUCUUCGA ((.((.....))..)).(((((((((((..((((((--(....((..(((.....)))..))..))))))).))))).....))))))........ ( -22.40) >DroYak_CAF1 35346 94 - 1 ACUCCAUUUAGGUGGUAUGGCCAAGAAUGAGGAAAC--ACAUUUGUGGUUUAUUUGGCCGUACAUGUUUCCGAUUCUCUGAAUUACCAAUCUUCAA ..........(((((((((((((((((((.(....)--.))))).........))))))))))....(((.(.....).))).))))......... ( -24.00) >consensus ACUCCAUUUAGGUGGUAUGGCAAAGAAUGAGGAAACA_ACAUUUGUGGUUUAUUUAGCUGUACAUGUUUCCGAUUCUCUGAAUUGCCAAUCUUCAA .........((((((((...((.(((((..((((....((((.((..(((.....)))..)).)))))))).))))).))...)))).)))).... (-18.74 = -18.62 + -0.12)
Location | 11,369,420 – 11,369,540 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.09 |
Mean single sequence MFE | -25.91 |
Consensus MFE | -19.77 |
Energy contribution | -19.77 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.07 |
Mean z-score | -2.82 |
Structure conservation index | 0.76 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961354 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11369420 120 + 22224390 CAGAGAAUCGAAAACAUGUACAGCUAAAUAAACCACAAAUGUGUGUUUCCUCAAUCUUUGCCAUACCACCUAAAUGGAGUUUCUUUUUGAUUCUUCUUUUGGGCUUUCGUUUCUUUCUCU .((((((.(((((....(((.((......(((((((....))).)))).......)).))).......((((((.((((..((.....))..)))).)))))).))))).....)))))) ( -25.22) >DroSec_CAF1 30100 118 + 1 CAGAGAAUCGGAAACAUGUACAGCUAAAUAAACCACAAAUGU-UAUUUCCACAUUCUUUGCCAUACCACCUAAAUGGAGUUUCUUUUUGAUUCUUCUU-UGGGCUUUCGUUUCUUUCUCU .((((((..((((((..(((..((.............(((((-.......)))))....))..)))..((((((.((((..((.....))..))))))-)))).....)))))))))))) ( -23.33) >DroSim_CAF1 11346 118 + 1 CAGAGAAUCGGAAACAUGUACAGCUAAAUAAACCACAAAUGU-UAUUUCCUCAUUCUUUGCCAUGCCACCUAAAUGGAGUUUCUUUUUGAUUCUUCUU-UGGGCUUUCGUUUCUUUCUCU .((((((..((((((..(((..((..................-................))..)))..((((((.((((..((.....))..))))))-)))).....)))))))))))) ( -23.08) >DroEre_CAF1 33866 117 + 1 CAGAGAAUCGGAAACAUGUACAGCCAAAUAAACCACAAAUGU--GUUUCCUCAUUCUUUGCCAUACAACCUAAAUGGAGUUUCUUUUCGAUUCUUCUG-UAGGUAUUCGUUUCUUUCUCU ((((((((.((((((((((...................))))--))))))..)))))))).......(((((...((((..((.....))..))))..-)))))................ ( -27.11) >DroYak_CAF1 35362 117 + 1 CAGAGAAUCGGAAACAUGUACGGCCAAAUAAACCACAAAUGU--GUUUCCUCAUUCUUGGCCAUACCACCUAAAUGGAGUUUCUUUUUGAUUCUUCUU-UAGAUUUUCGUUUCUUUCUCU .((((((..((((((..(((.((((((......(((....))--)...........)))))).)))...(((((.((((..((.....))..))))))-)))......)))))))))))) ( -30.83) >consensus CAGAGAAUCGGAAACAUGUACAGCUAAAUAAACCACAAAUGU_UGUUUCCUCAUUCUUUGCCAUACCACCUAAAUGGAGUUUCUUUUUGAUUCUUCUU_UGGGCUUUCGUUUCUUUCUCU .((((((..((((((..(((..((...................................))..)))..((((...((((..((.....))..))))...)))).....)))))))))))) (-19.77 = -19.77 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:55 2006