Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,344,347 – 11,344,439 |
Length | 92 |
Max. P | 0.613006 |
Location | 11,344,347 – 11,344,439 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 86.23 |
Mean single sequence MFE | -20.70 |
Consensus MFE | -14.86 |
Energy contribution | -14.87 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.15 |
Mean z-score | -2.09 |
Structure conservation index | 0.72 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613006 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11344347 92 + 22224390 UCAGUUCUGUAUAAUGUCGACGAGACAUGGAAAGCCCCAUCGCGACAUGCGAUGAAAAGCAAGCAAACUCUUCAGACCAAAAACAGACAAAU ...((.((((.....(((((.(((....((.....))((((((.....)))))).............))).)).))).....)))))).... ( -20.20) >DroSec_CAF1 5379 92 + 1 UCAGUUCUGGAAAAUGUCGGCGGGACAUGGAAAACCCCAUCGCGACAUGCGAUGAAAAGCCAGCGAACUCUUCAGACCAAAAACAGACAAAU ...(.((((((...(((.((((((..........)))((((((.....))))))....))).))).....)))))).).............. ( -22.90) >DroYak_CAF1 9448 85 + 1 UCAGUUCUGGAAAAUGUCGACGGGACAUGGAAA--CUCAUC--GACACUCGAUGAAAACCAAAC--ACUCUUCAGACCAA-AACAGACCAAU ...(.((((......(((((.(((...(((...--.(((((--(.....))))))...)))...--.))).)).)))...-..)))).)... ( -19.00) >consensus UCAGUUCUGGAAAAUGUCGACGGGACAUGGAAA_CCCCAUCGCGACAUGCGAUGAAAAGCAAGC_AACUCUUCAGACCAAAAACAGACAAAU .....((((......(((((.(((....((.....))((((((.....)))))).............))).)).)))......))))..... (-14.86 = -14.87 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:34 2006