Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,318,021 – 11,318,114 |
Length | 93 |
Max. P | 0.764047 |
Location | 11,318,021 – 11,318,114 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 78.59 |
Mean single sequence MFE | -27.23 |
Consensus MFE | -16.03 |
Energy contribution | -18.60 |
Covariance contribution | 2.57 |
Combinations/Pair | 1.17 |
Mean z-score | -2.09 |
Structure conservation index | 0.59 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.764047 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11318021 93 - 22224390 GACUGGUGUUGGUACUUCAAGAUGUAUCUGCAGGUUGGGA--------UACAUUAAAAUGUAUCUACAGAUUGAGAUAUUCGGAUAGCUUAAAAUGUAUCU-------- ((((..(((.(((((........))))).))))))).(((--------(((((....))))))))(((..(((((.(((....))).)))))..)))....-------- ( -20.60) >DroSec_CAF1 21089 109 - 1 GACUGGUGUUGGUACUUUAAGAUGUAUCUGCAGGUUGAGAUAUGCGGGUACUUUAAAAUGUAUCUACAGGUUGAGAUAUGUGGUUACUUUAACAUGUAUCUACAGAUUA ..(((.(((.((((((((.(((.(((((((((..........)))))))))))).))).))))).))).....(((((((((..........))))))))).))).... ( -29.70) >DroSim_CAF1 18237 109 - 1 GGCUGGUGUUGGUACUUUAAGAUGUAUCUACAGAUUAAGAUAUGCGGGUACCUUGAAAUGUAUCUGCAGGUUGGAAUAUGCGGGUACCUUAAAAUGUAUCUACAGAUUA ......(((.(((((((((((..(((((..((.(((..(((.(((((((((........))))))))).)))..))).))..)))))))))))..))))).)))..... ( -31.40) >consensus GACUGGUGUUGGUACUUUAAGAUGUAUCUGCAGGUUGAGAUAUGCGGGUACAUUAAAAUGUAUCUACAGGUUGAGAUAUGCGGAUACCUUAAAAUGUAUCUACAGAUUA (((....)))(((((.(((((..(((((((((.(((..(((.((.((((((........)))))).)).)))..))).))))))))))))))...)))))......... (-16.03 = -18.60 + 2.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:26 2006