Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,302,086 – 11,302,176 |
Length | 90 |
Max. P | 0.990734 |
Location | 11,302,086 – 11,302,176 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.00 |
Mean single sequence MFE | -29.53 |
Consensus MFE | -19.95 |
Energy contribution | -20.87 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.00 |
Mean z-score | -2.78 |
Structure conservation index | 0.68 |
SVM decision value | 2.23 |
SVM RNA-class probability | 0.990734 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11302086 90 - 22224390 UUCACUGGUGGUUUGAUUUCGACAUCAGGAUCGGAGGAUUCAAUUUCCACAACUGGU------------------------------GAGUUUUCCGUUUUUUUCUCCUUUUUCGUUUGC .((.((((((..(((....))))))))))).(((((((((((....(((....))))------------------------------))))))))))....................... ( -20.90) >DroSec_CAF1 5638 120 - 1 UUCGCUGGUGGUUUGAUUUGGUCAUCAGCAUCGGAGGAUUCAAUUUCCACAUCUGGUUGUGGAAGUACACCCUUAACAAUCUCAUUUGAGUUUUCCGUCUUUUUCUCCUUUUUCGUUUGC ...(((((((..(......)..)))))))..((((((((((((((((((((......)))))))))....................)))))))))))....................... ( -33.85) >DroSim_CAF1 6493 120 - 1 UUCGCUGGUGGUUUGAUUUGGUCAUCAGCAUCGGAGGAUUCAAUUUCCACAUCUGGUUGUGGAAGUACACCCUUAACAAUCUCAUUUGAGUUUUCCGUCUUUUUCUCCUUUUUCGUUUGC ...(((((((..(......)..)))))))..((((((((((((((((((((......)))))))))....................)))))))))))....................... ( -33.85) >consensus UUCGCUGGUGGUUUGAUUUGGUCAUCAGCAUCGGAGGAUUCAAUUUCCACAUCUGGUUGUGGAAGUACACCCUUAACAAUCUCAUUUGAGUUUUCCGUCUUUUUCUCCUUUUUCGUUUGC ...(((((((..(......)..)))))))..((((((((((.....(((....)))..(((......))).................))))))))))....................... (-19.95 = -20.87 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:21 2006