Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,259,726 – 1,259,838 |
Length | 112 |
Max. P | 0.988372 |
Location | 1,259,726 – 1,259,838 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.99 |
Mean single sequence MFE | -37.04 |
Consensus MFE | -13.31 |
Energy contribution | -14.19 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.24 |
Mean z-score | -2.36 |
Structure conservation index | 0.36 |
SVM decision value | 2.12 |
SVM RNA-class probability | 0.988372 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1259726 112 - 22224390 AUAAUUGUAUGCCAAGCCUCGGCAUUGUUCUCCUUUCCUUCUUUACAUCGA-----AGGGAAGG--GGACG-GGAAGAAGCUUCCAGCCUGGCCCAUGCAACUCCCCCUAGAAGCCAACU ....(((((((....(((..(((..(((((.((((((((((........))-----))))))))--)))))-(((((...))))).))).))).)))))))................... ( -40.40) >DroPse_CAF1 26007 109 - 1 AUAAUUUUCUGCAAGGCUUUGGCAUUGUUCUGUUCCACUCGCUUACAAGGAGCAGAGAGACAGGGGGGAAGGGACAGCAGCUG----------CUAUGCAACUCCCGCG-AAAGCCAACU ..............((((((.((....(((((((((............))))))))).....(((((....(.(.(((....)----------)).).)..))))))).-)))))).... ( -37.90) >DroSec_CAF1 13915 112 - 1 AUAAUUGUAUGCCAAGCCUCGGCAUUGUUCUCCUUUCCUUCCUUGCCUCGA-----AAGGAAGG--GGACG-GGAAGAAGCUUCCAGCCUGGCCCAUGCAACUCCCCCUAGAAGCCAACU ....((((((((((.((...(((.((.(((((.(..((((((((.......-----))))))))--..).)-)))).)))))....)).))))..))))))................... ( -37.20) >DroSim_CAF1 12592 112 - 1 AUAAUUGUAUGCCAAGCCUCGGCAUUGUUCUCCUUUCCUUCCUUGCCUCGA-----AAGGAAGG--GGACG-GGAAGAAGCUUCCAGCCUGGCCCAUGCAACUCCCCCUAGAAGCCAACU ....((((((((((.((...(((.((.(((((.(..((((((((.......-----))))))))--..).)-)))).)))))....)).))))..))))))................... ( -37.20) >DroPer_CAF1 26277 109 - 1 AUAAUUUUCUGCAAGGUUUUGGCAUUGUUCUGUUCCACUCGCUUACAAGGAGCAGAGAGAAAGGGGGGAAAGGACAGCAGCUG----------CAAUGCAACUCCCGCG-AAAGCCAACU ..............((((((.((....(((((((((............))))))))).....((((((......).(((....----------...)))..))))))).-)))))).... ( -32.50) >consensus AUAAUUGUAUGCCAAGCCUCGGCAUUGUUCUCCUUUCCUUCCUUACAUCGA_____AAGGAAGG__GGACG_GGAAGAAGCUUCCAGCCUGGCCCAUGCAACUCCCCCUAGAAGCCAACU ....................(((..(((((..((((((((................))))))))..))))).(((((...)))))............................))).... (-13.31 = -14.19 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:24 2006