Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,276,718 – 11,276,810 |
Length | 92 |
Max. P | 0.949135 |
Location | 11,276,718 – 11,276,810 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 91.25 |
Mean single sequence MFE | -16.19 |
Consensus MFE | -12.51 |
Energy contribution | -12.75 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.15 |
Mean z-score | -2.35 |
Structure conservation index | 0.77 |
SVM decision value | 1.39 |
SVM RNA-class probability | 0.949135 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11276718 92 + 22224390 CUAUAUUUAAAUGUCUGUUAACUCCUGCUGAUUGUUAAUACUGCCCCUCCCCCAGCAGCCUCCUCUUUUAGCCGCAAACAUAUCAUUUUAUA-- ........(((((..((((.....(.(((((..(......((((..........))))......)..))))).)..))))...)))))....-- ( -10.70) >DroSec_CAF1 6946 94 + 1 CUAUAUUUAAAUGUCUGUUAACUGCUGCUGAUUUUUAAUACUGCCCCUCCCCCAGCAGCCUCCUCUUUUAGCCGCAAACAUAUCAUUAUAUAUA .(((((...((((..((((...(((.(((((.........((((..........)))).........))))).)))))))...))))..))))) ( -16.07) >DroSim_CAF1 2914 92 + 1 CUAUAUUUAAAUGUCUGUUAACUGCUGCUGAUUGUUAAUACUGCCCCUCCCCCAGCAGCCUCCUCUUUUAGCCGCAAACAUAUCAUUAUAUA-- .........((((..((((...(((.(((((..(......((((..........))))......)..))))).)))))))...)))).....-- ( -16.20) >DroEre_CAF1 6827 87 + 1 CUACAUUUAAGUGUCUGUUAACUGCUGCUGAUUGUUAAUACUGC-----CCCCAGCAGCCUCGUCUUUCAGCCGCAGACAUAUCUUUAUAUA-- ..........((((((((.....(((((((...((.......))-----...)))))))...((......)).))))))))...........-- ( -20.40) >DroYak_CAF1 7189 90 + 1 CUAUAUUUAAAUGUCUGUUAACUGCUGCUGAUUGUUAAUACUGCGCC--CCCCAGCAGCCUCGUCUUUCAGCCGCAAAAAUAUCUUUAUAUA-- ......................(((.(((((..(......((((...--.....))))......)..))))).)))................-- ( -17.60) >consensus CUAUAUUUAAAUGUCUGUUAACUGCUGCUGAUUGUUAAUACUGCCCCUCCCCCAGCAGCCUCCUCUUUUAGCCGCAAACAUAUCAUUAUAUA__ .........((((..((((...(((.(((((.........((((..........)))).........))))).)))))))...))))....... (-12.51 = -12.75 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:11 2006