Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,246,159 – 11,246,257 |
Length | 98 |
Max. P | 0.522583 |
Location | 11,246,159 – 11,246,257 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 96.75 |
Mean single sequence MFE | -15.16 |
Consensus MFE | -14.28 |
Energy contribution | -14.48 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.10 |
Structure conservation index | 0.94 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522583 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11246159 98 + 22224390 CCAUGCUAA-CUUUCGAUUUUCAUACAUAGAAAUGCAUUUGCUGUAAGAACUAACACAGUUUCAGCAGAAACACAUGCGAAUAACCACUUACCUGCAUA ..((((...-........((((.......))))(((((.((((((..(((((.....)))))..))))...)).)))))...............)))). ( -15.20) >DroSec_CAF1 5657 98 + 1 CCAUGCUAA-CUUUCGAUUUUCAUACAUAGAAAUGCAUUUGCUGUACGAACUAACACAGUUUCAGCAGAAACACAUGCGAAUAACCACUUACCUGCAUA ..((((...-........((((.......))))(((((((((((...(((((.....))))))))))))......))))...............)))). ( -15.00) >DroSim_CAF1 6144 98 + 1 CCAUGCUAA-CUUUCGAUUUUCAUACAUAGAAAUGCAUUUGCUGUACGAACUAACACAGUUUCAGCAGAAACACAUGCGAAUAACCACUUACCUGCAUA ..((((...-........((((.......))))(((((((((((...(((((.....))))))))))))......))))...............)))). ( -15.00) >DroEre_CAF1 5655 98 + 1 CCAUGCUAA-CGUUCGAUUUUCAUACAUAGAAAUGCAUUUGCUGUAAGAUCUAACACAGUUUCAGCAGAAACACAUGCGAUUAACCACUUACCUGCAUA ..((((...-.(((.(((((...((((((((......)))).))))))))).)))...(((((....)))))......................)))). ( -14.10) >DroYak_CAF1 5648 99 + 1 CCAUGCAAAAUUUUCGAUUUUCAUACAUAGAAAUGCAUUUGCUGUAAGAACUAACACAGUUUCAGCAGAAACACAUGCGAUUAACCACUUACCUGCAUA ..(((((...........((((.......))))(((((.((((((..(((((.....)))))..))))...)).)))))..............))))). ( -16.50) >consensus CCAUGCUAA_CUUUCGAUUUUCAUACAUAGAAAUGCAUUUGCUGUAAGAACUAACACAGUUUCAGCAGAAACACAUGCGAAUAACCACUUACCUGCAUA ..((((............((((.......))))(((((((((((...(((((.....))))))))))))......))))...............)))). (-14.28 = -14.48 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:58 2006