Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,242,453 – 11,242,549 |
Length | 96 |
Max. P | 0.853956 |
Location | 11,242,453 – 11,242,549 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 89.87 |
Mean single sequence MFE | -23.60 |
Consensus MFE | -18.60 |
Energy contribution | -19.24 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.04 |
Mean z-score | -1.84 |
Structure conservation index | 0.79 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.853956 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11242453 96 - 22224390 CACAAAGAUCGCUUGAUCAGACUAUAAUGGUCUGAUCCAGAACACAACUCUAGAACACUAGGCGCAACUUUUGAGGGCGGGAUGUUCAAAUCAACA ........(((((((((((((((.....)))))))))(((((......(((((....)))))......))))).))))))(((......))).... ( -24.80) >DroSec_CAF1 1958 96 - 1 CACAAAGAUCGCUUGAUCAGACUAUAACGGUCUGAUCCAGAACACAACUCUAGAACACUAGGCGCAACUUCGGAGGGCGGGAUGUUCAAAUCAACA ......(((.....(((((((((.....)))))))))..(((((....(((((....)))))(((..(....)...)))...)))))..))).... ( -26.10) >DroSim_CAF1 2544 96 - 1 CACAAAGAUCGCUUGAUCAGACUAUAAUGGUCUGAUCCAGAACACAACUCUAGAACACUAGGCGCAACUUUGGAGGGCGGGAUGUUCAAAUCAACA ..(((((..(((..(((((((((.....)))))))))............((((....)))))))...)))))..((((.....))))......... ( -24.70) >DroEre_CAF1 2007 94 - 1 CA--ACGAUCGGGUGAUCAGACUAUAAUAGUCUGAUCCAGAACACAAUUCUAUAACACUAGGCACAACUUUGGAGGGCGGGAUGUUCAAAUCAACA ..--..(((...(.((((((((((...))))))))))).(((((....(((....(.(((((......))))).)....))))))))..))).... ( -21.10) >DroYak_CAF1 1989 94 - 1 CA--UAGAUUUGGGUAUCAAACUCUAAUGGUCUGAUCCAGAACACAAUUCUAAAACACUAGGCACAACUUUUGAGGGCAGGAUGUUCAAAUCAACA ..--..((((((..((((...((((..((.((((...))))...)).........((..((......))..))))))...))))..)))))).... ( -21.30) >consensus CACAAAGAUCGCUUGAUCAGACUAUAAUGGUCUGAUCCAGAACACAACUCUAGAACACUAGGCGCAACUUUGGAGGGCGGGAUGUUCAAAUCAACA ......(((.....(((((((((.....)))))))))..(((((.....((((....))))((.(..(....)..)))....)))))..))).... (-18.60 = -19.24 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:57 2006