Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,206,003 – 11,206,095 |
Length | 92 |
Max. P | 0.882766 |
Location | 11,206,003 – 11,206,095 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.87 |
Mean single sequence MFE | -23.37 |
Consensus MFE | -12.42 |
Energy contribution | -16.53 |
Covariance contribution | 4.12 |
Combinations/Pair | 1.09 |
Mean z-score | -2.71 |
Structure conservation index | 0.53 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.882766 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11206003 92 + 22224390 AAACGUAACUCCAUCCCUUUCGUUUUCGUAGAAAAACCUUCUAUAU---AUAAUGACAUCAU-------UAUAUGAUGUUAUGUGUAGAUUAGAAUUCCCAU------------------ ..(((((((((................((((((.....))))))((---((((((....)))-------))))))).)))))))..................------------------ ( -16.10) >DroSec_CAF1 2912 120 + 1 AAACGUAACUCUAUCCCUUUCGUUUCCGUAGGAAAACCUUAUAUAUAAUAAGAUGAUAUGAUAAUAUGAUAUAUGAUGUUAUGUAUAGAUUGGAAUUCCCAUAUGGAAAUGAUAAAAUAA ...................(((((((((((((((..((((((((((((((..((.((((....)))).))......))))))))))))...))..))))..)))))))))))........ ( -26.50) >DroSim_CAF1 3534 117 + 1 AAAUGUAACUCUAUCCCUUUCGUUUCCGUAGGAAAACCUUAUAUAU---AAGAUGAUAUUAUAAUAUGAUAUAUGAUGUUAUGUAUAGAUUGGAAUUCCCAUAUGGAAAUGAUAAAAUAA ...................(((((((((((((((..((((((((((---((.((.((((...........)))).)).))))))))))...))..))))..)))))))))))........ ( -27.50) >consensus AAACGUAACUCUAUCCCUUUCGUUUCCGUAGGAAAACCUUAUAUAU___AAGAUGAUAUCAUAAUAUGAUAUAUGAUGUUAUGUAUAGAUUGGAAUUCCCAUAUGGAAAUGAUAAAAUAA ...................(((((((((((((((..((...(((((......(((((((((((........))))))))))))))))....))..))))..)))))))))))........ (-12.42 = -16.53 + 4.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:37 2006