Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,119,903 – 11,120,001 |
Length | 98 |
Max. P | 0.995621 |
Location | 11,119,903 – 11,120,001 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 76.05 |
Mean single sequence MFE | -21.84 |
Consensus MFE | -9.85 |
Energy contribution | -11.33 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.23 |
Mean z-score | -1.99 |
Structure conservation index | 0.45 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.818520 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11119903 98 + 22224390 UUUUCGCAUGCAAUUAAUGUUGUUGGCCAUUUUGCAAUUGACCAUCGGCAAUCGGCAAUUGU------U--------UGC---UGGCCAUUUCAUAAUUUGCCAAUCAUUAUUUA .........((((...(((....((((((.(..(((((((.((..........)))))))))------.--------.).---))))))...)))...))))............. ( -24.60) >DroSec_CAF1 35256 98 + 1 UUUUCGCAUGCAAUUAAUGUUGUUGGCCAUUUUGCAAUUGACCAACGGCAAUCGGCAAUUGU------U--------UGC---UGGCCAUUUCAUAAUUUGCCAAUCAUUAUUUA .........((((...(((....((((((.(..(((((((.((..........)))))))))------.--------.).---))))))...)))...))))............. ( -24.60) >DroEre_CAF1 33936 97 + 1 UUUUCGUAUGCAAUUAAUGUUGUUGGCCAU-UUGCAAUUGACCAUCGGCAAUCGGCAAUUGU------U--------UGC---UGGCCAUUUCAUAAUUUGCCAAUCAUUAUUUA .........((((...(((....((((((.-..(((((((.((..........)))))))))------.--------...---))))))...)))...))))............. ( -24.00) >DroYak_CAF1 37968 98 + 1 UUUUCGUAUGCAAUUAAUGUUGUUGGCCAUUUUGCAAUUGACCAACGGCAAUCGGCAAUUGU------U--------UGC---UGACCAUUUCAUAAUUUGCCAAUCAUUAUUUA .........((((....(((((((((.((.........)).))))))))).(((((((....------)--------)))---)))............))))............. ( -23.00) >DroMoj_CAF1 43472 110 + 1 UUAUUUC----GUUUAUUAUU-GCGUUCAUUAUUCUUUUGCCAAUUAUUAUUAAAUAUUUGUUAUUGUUGCUGUCGCUGCUGUUGUGUGGUUCACAAUUUGCGCAUCAUAAUUUA .......----..((((...(-((((...............(((.((((....)))).)))..(((((.((((.(((.......)))))))..)))))..)))))..)))).... ( -13.00) >consensus UUUUCGCAUGCAAUUAAUGUUGUUGGCCAUUUUGCAAUUGACCAUCGGCAAUCGGCAAUUGU______U________UGC___UGGCCAUUUCAUAAUUUGCCAAUCAUUAUUUA .........((((...(((....((((((....(((((((.((..........))))))))).....................))))))...)))...))))............. ( -9.85 = -11.33 + 1.48)
Location | 11,119,903 – 11,120,001 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 76.05 |
Mean single sequence MFE | -21.80 |
Consensus MFE | -8.47 |
Energy contribution | -9.67 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.26 |
Mean z-score | -2.67 |
Structure conservation index | 0.39 |
SVM decision value | 2.60 |
SVM RNA-class probability | 0.995621 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11119903 98 - 22224390 UAAAUAAUGAUUGGCAAAUUAUGAAAUGGCCA---GCA--------A------ACAAUUGCCGAUUGCCGAUGGUCAAUUGCAAAAUGGCCAACAACAUUAAUUGCAUGCGAAAA .............((((...(((...((((((---...--------.------.(((((((((........))).)))))).....))))))....)))...))))......... ( -22.90) >DroSec_CAF1 35256 98 - 1 UAAAUAAUGAUUGGCAAAUUAUGAAAUGGCCA---GCA--------A------ACAAUUGCCGAUUGCCGUUGGUCAAUUGCAAAAUGGCCAACAACAUUAAUUGCAUGCGAAAA .............((((...(((...((((((---...--------.------.(((((((((((....))))).)))))).....))))))....)))...))))......... ( -25.90) >DroEre_CAF1 33936 97 - 1 UAAAUAAUGAUUGGCAAAUUAUGAAAUGGCCA---GCA--------A------ACAAUUGCCGAUUGCCGAUGGUCAAUUGCAA-AUGGCCAACAACAUUAAUUGCAUACGAAAA .............((((...(((...((((((---...--------.------.(((((((((........))).))))))...-.))))))....)))...))))......... ( -22.50) >DroYak_CAF1 37968 98 - 1 UAAAUAAUGAUUGGCAAAUUAUGAAAUGGUCA---GCA--------A------ACAAUUGCCGAUUGCCGUUGGUCAAUUGCAAAAUGGCCAACAACAUUAAUUGCAUACGAAAA .............((((...(((...((((((---...--------.------.(((((((((((....))))).)))))).....))))))....)))...))))......... ( -23.20) >DroMoj_CAF1 43472 110 - 1 UAAAUUAUGAUGCGCAAAUUGUGAACCACACAACAGCAGCGACAGCAACAAUAACAAAUAUUUAAUAAUAAUUGGCAAAAGAAUAAUGAACGC-AAUAAUAAAC----GAAAUAA ....((((..((((....(((((.....)))))..((.((....))........(((.((((....)))).)))))..............)))-)...))))..----....... ( -14.50) >consensus UAAAUAAUGAUUGGCAAAUUAUGAAAUGGCCA___GCA________A______ACAAUUGCCGAUUGCCGAUGGUCAAUUGCAAAAUGGCCAACAACAUUAAUUGCAUGCGAAAA .............((((...(((...((((((.........................((((.((((((.....).)))))))))..))))))....)))...))))......... ( -8.47 = -9.67 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:57 2006