Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,227,828 – 1,227,938 |
Length | 110 |
Max. P | 0.964650 |
Location | 1,227,828 – 1,227,938 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 90.33 |
Mean single sequence MFE | -39.59 |
Consensus MFE | -33.70 |
Energy contribution | -35.02 |
Covariance contribution | 1.32 |
Combinations/Pair | 1.09 |
Mean z-score | -1.87 |
Structure conservation index | 0.85 |
SVM decision value | 1.57 |
SVM RNA-class probability | 0.964650 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1227828 110 + 22224390 CCCCUUGGCUCGGCUGCCGAGAUGUACACACACAUAUUCGGAUUCUGAUUUUGCCGAGAGGAAGUGCAGUUCCGGAGUCCCGAGUGUGGAGCUGCGCUCAAUCUGCAUCC .((((((((((((...(((((((((......)))).)))))...))))....)))))).)).((((((((((((.(.(....).).))))))))))))............ ( -43.20) >DroSec_CAF1 1361 106 + 1 CCCCUUGACUCGGCUGCCGAGAUGUACACACACAUAUUCGGAUUCUGAUUUUGCCGAGA----GUGCAGUUCCGGAGUCGCGAGUCCUGAGCUGCGCUCAAUCUGCAUCC .........(((((..(((((((((......)))).)))))...........)))))((----(((((((((.(((.(....).))).)))))))))))........... ( -39.12) >DroSim_CAF1 5226 106 + 1 CCCCUUGACUCGGCUGCCGAGAUGUACACACACAUAUUCGGAUUCUGAUUUUGCCGAGA----GUGCAGUUCCGGAGUCGCGAGUCCUGAGCUGCGCUCAAUCUGCAUCC .........(((((..(((((((((......)))).)))))...........)))))((----(((((((((.(((.(....).))).)))))))))))........... ( -39.12) >DroEre_CAF1 1373 110 + 1 GUCGUUGUAUCGACUGCCGAGAUGUACACACACAUAUUCGGAUUCCGAUUUUGCCGAGAGGAAUUGCAGUUCCGGAGUCCCGAGUCCGGAUUUGCGCUCAAUCCGCAUUC ((((......))))..(((((((((......)))).)))))..........(((.((...((..(((((.((((((.(....).)))))).))))).))..)).)))... ( -33.40) >DroYak_CAF1 5128 110 + 1 CCCGUUGGCUCGGCUGCCGAGAUGUACACACACAUAUUCGGAUUCUGAUUUUGCCGAGAGGAAUUGCAGUUCCGGAGUCGCGAGUCCGGAGCUGCGCUCAAUCCGCAUCU ((..(((((((((...(((((((((......)))).)))))...))))....)))))..))....(((((((((((.(....).)))))))))))((.......)).... ( -43.10) >consensus CCCCUUGACUCGGCUGCCGAGAUGUACACACACAUAUUCGGAUUCUGAUUUUGCCGAGAGGAAGUGCAGUUCCGGAGUCGCGAGUCCGGAGCUGCGCUCAAUCUGCAUCC ....((((((((((..(((((((((......)))).)))))...........)))))).....(((((((((((((.(....).)))))))))))))))))......... (-33.70 = -35.02 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:13 2006