Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,035,432 – 11,035,538 |
Length | 106 |
Max. P | 0.982095 |
Location | 11,035,432 – 11,035,538 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.31 |
Mean single sequence MFE | -36.28 |
Consensus MFE | -29.38 |
Energy contribution | -29.82 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -1.40 |
Structure conservation index | 0.81 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594449 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11035432 106 + 22224390 UGGCGGGCAAAGUCUGAAAAAUGACAGGCACCGCAGCGCCACUGACAUGACAGACAUCCUGU-UCCCUGGGAAACGGAAACCGGACAGCCU-------------CCCCCACCGAAUUUUC .((.((((...(((((....(((.(((((........)))..)).)))..))))).(((.((-(.((..(....))).))).)))..))))-------------.))............. ( -28.90) >DroSec_CAF1 22757 107 + 1 UGGCGGGCAAAGUCUGAAGAAUGACAGGCGCCGCAGCGCCACUGACAUGACAGACAUCCUGUUUCCCUGGGAAACGGAAACCGGACAGCCU-------------CCCCCACCGAAUUUUC .((.((((...(((((....(((.(((((((....)))))..)).)))..))))).(((.((((((...(....))))))).)))..))))-------------.))............. ( -38.20) >DroSim_CAF1 14544 107 + 1 UGGCGGGCAAAGUCUGAAAAAUGACAGGCGCCGCAGCGCCACUGACAUGACAGACAUCCUGUUUCCCUGGGAAACGGAAACCGGACAGCCU-------------CCCCCACCGAAUUUUC .((.((((...(((((....(((.(((((((....)))))..)).)))..))))).(((.((((((...(....))))))).)))..))))-------------.))............. ( -38.20) >DroEre_CAF1 17032 106 + 1 UGGCGGGCAAAGUCUGAAAAAUGACAGGCGGCGCAGCGCCACUGACAUGACAGACAUCCUGU-UGCCUGGGACACGGAAGCCGGACAGCCU-------------CCCCCGCCGAAUUUUC .((((((....(((((....(((.(((..((((...)))).))).)))..))))).....((-((.((((....(....))))).))))..-------------..))))))........ ( -39.40) >DroYak_CAF1 17860 119 + 1 UGGCGGGCAAAGUCUGAAAAAUGACAGGCGCCGCAGCGCCACUGACAUGACAGACAUCCUGU-UCCCUGGGAAACGGAAACCGGACAGCCUCAGCCUCAGCCUCCCCCCACCGAAUUUUC .(((((((...(((((....(((.(((((((....)))))..)).)))..)))))...((((-((....(....)(....).)))))).....))))..))).................. ( -36.70) >consensus UGGCGGGCAAAGUCUGAAAAAUGACAGGCGCCGCAGCGCCACUGACAUGACAGACAUCCUGU_UCCCUGGGAAACGGAAACCGGACAGCCU_____________CCCCCACCGAAUUUUC .((.(((....(((((....(((.(((((((....)))))..)).)))..))))).(((.((.(((...(....)))).)).))).....................))).))........ (-29.38 = -29.82 + 0.44)
Location | 11,035,432 – 11,035,538 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.31 |
Mean single sequence MFE | -47.26 |
Consensus MFE | -37.74 |
Energy contribution | -37.82 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.07 |
Mean z-score | -2.43 |
Structure conservation index | 0.80 |
SVM decision value | 1.91 |
SVM RNA-class probability | 0.982095 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11035432 106 - 22224390 GAAAAUUCGGUGGGGG-------------AGGCUGUCCGGUUUCCGUUUCCCAGGGA-ACAGGAUGUCUGUCAUGUCAGUGGCGCUGCGGUGCCUGUCAUUUUUCAGACUUUGCCCGCCA ........((((((.(-------------((...((((.((((((........))))-)).))))(((((..(((.((..(((((....))))))).)))....)))))))).)))))). ( -43.90) >DroSec_CAF1 22757 107 - 1 GAAAAUUCGGUGGGGG-------------AGGCUGUCCGGUUUCCGUUUCCCAGGGAAACAGGAUGUCUGUCAUGUCAGUGGCGCUGCGGCGCCUGUCAUUCUUCAGACUUUGCCCGCCA ........((((((((-------------(((((....)))))))((((((...)))))).....(((((..(((.((..(((((....))))))).)))....)))))....)))))). ( -45.40) >DroSim_CAF1 14544 107 - 1 GAAAAUUCGGUGGGGG-------------AGGCUGUCCGGUUUCCGUUUCCCAGGGAAACAGGAUGUCUGUCAUGUCAGUGGCGCUGCGGCGCCUGUCAUUUUUCAGACUUUGCCCGCCA ........((((((((-------------(((((....)))))))((((((...)))))).....(((((..(((.((..(((((....))))))).)))....)))))....)))))). ( -45.40) >DroEre_CAF1 17032 106 - 1 GAAAAUUCGGCGGGGG-------------AGGCUGUCCGGCUUCCGUGUCCCAGGCA-ACAGGAUGUCUGUCAUGUCAGUGGCGCUGCGCCGCCUGUCAUUUUUCAGACUUUGCCCGCCA ........((((((((-------------(((((....)))))))..((((..(...-.).))))(((((..(((.((((((((...))))).))).)))....)))))....)))))). ( -48.70) >DroYak_CAF1 17860 119 - 1 GAAAAUUCGGUGGGGGGAGGCUGAGGCUGAGGCUGUCCGGUUUCCGUUUCCCAGGGA-ACAGGAUGUCUGUCAUGUCAGUGGCGCUGCGGCGCCUGUCAUUUUUCAGACUUUGCCCGCCA ........((((((.((((.(((((((..((((.((((.((((((........))))-)).)))))))))))(((.((..(((((....))))))).)))...)))).)))).)))))). ( -52.90) >consensus GAAAAUUCGGUGGGGG_____________AGGCUGUCCGGUUUCCGUUUCCCAGGGA_ACAGGAUGUCUGUCAUGUCAGUGGCGCUGCGGCGCCUGUCAUUUUUCAGACUUUGCCCGCCA ........((((((....................((((...((((........))))....))))(((((..(((.((..(((((....))))))).)))....)))))....)))))). (-37.74 = -37.82 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:13 2006