Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,996,566 – 10,996,681 |
Length | 115 |
Max. P | 0.976522 |
Location | 10,996,566 – 10,996,681 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.48 |
Mean single sequence MFE | -41.14 |
Consensus MFE | -33.28 |
Energy contribution | -34.40 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.10 |
Mean z-score | -2.31 |
Structure conservation index | 0.81 |
SVM decision value | 1.77 |
SVM RNA-class probability | 0.976522 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10996566 115 + 22224390 GGAGGACCUGGAGAUCACCAGUUUGCAGAACGAUCGCAACAAGAACAGAACCAGCGAUGGCAAGGGGACACCGCCAUCGCUGGAGCCAACGAAUGCUGCCGCCAAUCAGGCAGCC----- (..((..((((......)))).((((.((....))))))...........(((((((((((..(....)...)))))))))))..))..)....((((((........)))))).----- ( -44.40) >DroSec_CAF1 8795 115 + 1 GGAGGACCUGGAGAUCACCAGUUUGCAGAACGGUCGCAACAAGAACAAGACGAGCGAUGGCAAGGGAACACCGCCAUCGCUGGAGCCAACGAAUGCUGCCGCCAAUCAGGCAGCC----- ((..(((((((......)))((((...))))))))...............(.(((((((((..((.....))))))))))).)..)).......((((((........)))))).----- ( -41.60) >DroSim_CAF1 10814 115 + 1 GGAGGAACUGGAGAUCACCAGUUUGCAGAACGGUCGCAACAAGAACAAGACGAGCGAUGGCAAGGGAACACCGCCAUCGCUGGAGCCAACGAAUGCUGCCGCCAAUCAGGCAGCC----- ((..(((((((......)))))))((.((....)))).............(.(((((((((..((.....))))))))))).)..)).......((((((........)))))).----- ( -42.10) >DroEre_CAF1 7969 117 + 1 GGAGGAUAUGGAGAUCACCAGUUUGGAGAACAGUCGCA---AGAACAAGACCAGCGAGGGCAGGAAGACACCGCCAUCGCUGGAGCUUACAAAUGCUGCCACCAAUCAGGCAGCCAAUGC ((..(((......))).)).((((((((.....((...---.))......(((((((.(((.((......))))).)))))))..))).)))))((((((........))))))...... ( -40.20) >DroYak_CAF1 8822 117 + 1 GGAGGAUAUGGAGAUCACCAGUUUGGAGAACAGUCGCA---AGAACAAGACCAGCGAGGGCAGGAAGACACCGCCAUCGCUGGAGCUAACAAAUGCUGCUACCAAUCAGGCAGCCAAUGC ((..(((......))).)).(((((........((...---.))......(((((((.(((.((......))))).)))))))......)))))((((((........))))))...... ( -37.40) >consensus GGAGGACCUGGAGAUCACCAGUUUGCAGAACGGUCGCAACAAGAACAAGACCAGCGAUGGCAAGGGGACACCGCCAUCGCUGGAGCCAACGAAUGCUGCCGCCAAUCAGGCAGCC_____ ((..(((((((......)))((((...))))))))...............(((((((((((..(....)...)))))))))))..)).......((((((........))))))...... (-33.28 = -34.40 + 1.12)
Location | 10,996,566 – 10,996,681 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.48 |
Mean single sequence MFE | -41.65 |
Consensus MFE | -38.22 |
Energy contribution | -38.54 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.14 |
Mean z-score | -1.68 |
Structure conservation index | 0.92 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.926088 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10996566 115 - 22224390 -----GGCUGCCUGAUUGGCGGCAGCAUUCGUUGGCUCCAGCGAUGGCGGUGUCCCCUUGCCAUCGCUGGUUCUGUUCUUGUUGCGAUCGUUCUGCAAACUGGUGAUCUCCAGGUCCUCC -----.((((((.....)))))).(((..((..(((.(((((((((((((.......)))))))))))))....)))..)).)))..............((((......))))....... ( -45.50) >DroSec_CAF1 8795 115 - 1 -----GGCUGCCUGAUUGGCGGCAGCAUUCGUUGGCUCCAGCGAUGGCGGUGUUCCCUUGCCAUCGCUCGUCUUGUUCUUGUUGCGACCGUUCUGCAAACUGGUGAUCUCCAGGUCCUCC -----((((((..((.(((..((((((......(((...(((((((((((.......))))))))))).))).......))))))..))).)).)))..((((......))))))).... ( -41.12) >DroSim_CAF1 10814 115 - 1 -----GGCUGCCUGAUUGGCGGCAGCAUUCGUUGGCUCCAGCGAUGGCGGUGUUCCCUUGCCAUCGCUCGUCUUGUUCUUGUUGCGACCGUUCUGCAAACUGGUGAUCUCCAGUUCCUCC -----((.(((..((.(((..((((((......(((...(((((((((((.......))))))))))).))).......))))))..))).)).)))((((((......))))))))... ( -41.32) >DroEre_CAF1 7969 117 - 1 GCAUUGGCUGCCUGAUUGGUGGCAGCAUUUGUAAGCUCCAGCGAUGGCGGUGUCUUCCUGCCCUCGCUGGUCUUGUUCU---UGCGACUGUUCUCCAAACUGGUGAUCUCCAUAUCCUCC (((...((((((........)))))).....((((..(((((((.(((((.(....)))))).))))))).))))....---)))......((.((.....)).)).............. ( -41.00) >DroYak_CAF1 8822 117 - 1 GCAUUGGCUGCCUGAUUGGUAGCAGCAUUUGUUAGCUCCAGCGAUGGCGGUGUCUUCCUGCCCUCGCUGGUCUUGUUCU---UGCGACUGUUCUCCAAACUGGUGAUCUCCAUAUCCUCC ...(((((((((.....))))))((((.((((.(((.(((((((.(((((.(....)))))).)))))))....)))..---.)))).))))...)))..(((......)))........ ( -39.30) >consensus _____GGCUGCCUGAUUGGCGGCAGCAUUCGUUGGCUCCAGCGAUGGCGGUGUCCCCUUGCCAUCGCUGGUCUUGUUCUUGUUGCGACCGUUCUGCAAACUGGUGAUCUCCAGAUCCUCC ......((((((.....)))))).(((......(((.(((((((((((((.......)))))))))))))....))).....)))..............((((......))))....... (-38.22 = -38.54 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:42 2006