Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,984,665 – 10,984,756 |
Length | 91 |
Max. P | 0.998779 |
Location | 10,984,665 – 10,984,756 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 93.41 |
Mean single sequence MFE | -21.94 |
Consensus MFE | -18.92 |
Energy contribution | -20.00 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.04 |
Mean z-score | -2.53 |
Structure conservation index | 0.86 |
SVM decision value | 3.22 |
SVM RNA-class probability | 0.998779 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10984665 91 + 22224390 CAGAUAUGUAGAUGUAGUUAAGCAGAGAUAUAUGUAUACAUAUAUACUUGUUAUGCAAGCGAACAGUGUGCAUGUCCAAGUG-AAUGGUGAA ...(((((((..(((......)))....))))))).(((.(((.((((((.((((((.((.....)).))))))..))))))-.)))))).. ( -20.70) >DroSec_CAF1 8741 92 + 1 CAGAUAUGUAGAUGUAGUUAAGCAGAGAUAUAUCUAUACAUAUAUACUUGUUAUGCAAGCGAACAGUGUGCAUGUCCAAGUGGAAUGGUGAA .((((((((...(((......)))...)))))))).(((.....((((((.((((((.((.....)).))))))..)))))).....))).. ( -25.10) >DroSim_CAF1 8866 92 + 1 CAGAUAUGUAGAUGUAGUUAAGCAGAGAUAUAUCUAUACAUAUAUACUUGUUAUGCAAGCGAACAGUGUGCAUGUCCAAGUGGAAUGGUGAA .((((((((...(((......)))...)))))))).(((.....((((((.((((((.((.....)).))))))..)))))).....))).. ( -25.10) >DroEre_CAF1 9545 85 + 1 CAUAUAU------GUAGUUAAGCAGAGAUAUAUGUAUACAUAUAUACUUGUUAUGCAAGCAAACAGUGUGCAUGUCCAAGUG-AAUGGUGAA .((((((------(((.....(((........))).)))))))))(((((.((((((.((.....)).))))))..))))).-......... ( -19.40) >DroYak_CAF1 9198 85 + 1 CAUAUAU------GUAGUUAAGCAGAGAUAUAUGUAUACAUAUAUACUUGUUAUGCAAGCAAACAGUGUGCAUGUCCAAGUG-AAUGGUGAA .((((((------(((.....(((........))).)))))))))(((((.((((((.((.....)).))))))..))))).-......... ( -19.40) >consensus CAGAUAUGUAGAUGUAGUUAAGCAGAGAUAUAUGUAUACAUAUAUACUUGUUAUGCAAGCGAACAGUGUGCAUGUCCAAGUG_AAUGGUGAA .((((((((...(((......)))...)))))))).(((.....((((((.((((((.((.....)).))))))..)))))).....))).. (-18.92 = -20.00 + 1.08)
Location | 10,984,665 – 10,984,756 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 93.41 |
Mean single sequence MFE | -13.12 |
Consensus MFE | -11.14 |
Energy contribution | -11.54 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.60 |
Structure conservation index | 0.85 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.895547 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10984665 91 - 22224390 UUCACCAUU-CACUUGGACAUGCACACUGUUCGCUUGCAUAACAAGUAUAUAUGUAUACAUAUAUCUCUGCUUAACUACAUCUACAUAUCUG .........-.(((((...(((((..(.....)..)))))..)))))(((((((....)))))))........................... ( -12.90) >DroSec_CAF1 8741 92 - 1 UUCACCAUUCCACUUGGACAUGCACACUGUUCGCUUGCAUAACAAGUAUAUAUGUAUAGAUAUAUCUCUGCUUAACUACAUCUACAUAUCUG ...........(((((...(((((..(.....)..)))))..)))))..(((((((((((......))))............)))))))... ( -12.00) >DroSim_CAF1 8866 92 - 1 UUCACCAUUCCACUUGGACAUGCACACUGUUCGCUUGCAUAACAAGUAUAUAUGUAUAGAUAUAUCUCUGCUUAACUACAUCUACAUAUCUG ...........(((((...(((((..(.....)..)))))..)))))..(((((((((((......))))............)))))))... ( -12.00) >DroEre_CAF1 9545 85 - 1 UUCACCAUU-CACUUGGACAUGCACACUGUUUGCUUGCAUAACAAGUAUAUAUGUAUACAUAUAUCUCUGCUUAACUAC------AUAUAUG .........-.(((((...(((((..(.....)..)))))..)))))(((((((((....................)))------)))))). ( -14.35) >DroYak_CAF1 9198 85 - 1 UUCACCAUU-CACUUGGACAUGCACACUGUUUGCUUGCAUAACAAGUAUAUAUGUAUACAUAUAUCUCUGCUUAACUAC------AUAUAUG .........-.(((((...(((((..(.....)..)))))..)))))(((((((((....................)))------)))))). ( -14.35) >consensus UUCACCAUU_CACUUGGACAUGCACACUGUUCGCUUGCAUAACAAGUAUAUAUGUAUACAUAUAUCUCUGCUUAACUACAUCUACAUAUCUG ...........(((((...(((((..(.....)..)))))..)))))(((((((....)))))))........................... (-11.14 = -11.54 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:28 2006