Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,948,880 – 10,948,979 |
Length | 99 |
Max. P | 0.893760 |
Location | 10,948,880 – 10,948,979 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 82.53 |
Mean single sequence MFE | -29.70 |
Consensus MFE | -18.61 |
Energy contribution | -19.18 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.05 |
Mean z-score | -2.34 |
Structure conservation index | 0.63 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.893760 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10948880 99 + 22224390 AAACCAUGGCCCACUAUCAGGUCCACGUACUGAUUUCGUUUCGUGUGCCGAUUUGAC-GAUUUCCCGAUCCCGAUAACGAUACGGACGAUGGGCCAUGGC ...((((((((((...(((((((...(((((((.......))).)))).))))))).-......((((((........))).)))....)))))))))). ( -35.10) >DroSec_CAF1 6934 100 + 1 AAACCAUGGCAUACUAUCAGGUCCACGUACUGAUUUCGUUGCGUAUGCCGAUUUGACUGAUUUCCCGAUCCCGAUAACGAUACGGACGAUGGGCCAUGGC ...(((((((...(((((.(((..(((((.((....)).)))))..)))...............((((((........))).)))..)))))))))))). ( -31.00) >DroEre_CAF1 6811 80 + 1 AAACCAUGGCG---UAUCAGGCCCACGUACUGAUUUCGUUUCGUAUGCCGA---------UUCCGCGAUCCCGAUAACGAUACGG--------CCAUGGC ...((((((((---((((.(((..(((...((....))...)))..)))((---------((....))))........))))).)--------)))))). ( -26.60) >DroYak_CAF1 7432 80 + 1 AAACCAUGGCC---UAUCAGGUCCACGUACUGAUUUCGUUUCGUAUGCCGA---------UUCCCCGAUCCCGAUAACGAUACGG--------CCAUGGC ...((((((((---((((.(((..(((...((....))...)))..)))((---------((....))))........)))).))--------)))))). ( -26.10) >consensus AAACCAUGGCC___UAUCAGGUCCACGUACUGAUUUCGUUUCGUAUGCCGA_________UUCCCCGAUCCCGAUAACGAUACGG________CCAUGGC ...(((((((.........(((..(((...((....))...)))..)))...............((((((........))).))).......))))))). (-18.61 = -19.18 + 0.56)
Location | 10,948,880 – 10,948,979 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 82.53 |
Mean single sequence MFE | -31.73 |
Consensus MFE | -20.74 |
Energy contribution | -21.30 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -2.15 |
Structure conservation index | 0.65 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.867504 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10948880 99 - 22224390 GCCAUGGCCCAUCGUCCGUAUCGUUAUCGGGAUCGGGAAAUC-GUCAAAUCGGCACACGAAACGAAAUCAGUACGUGGACCUGAUAGUGGGCCAUGGUUU ((((((((((((..((((((....)).))))((((((.....-(((.....))).((((..((.......)).))))..)))))).)))))))))))).. ( -39.30) >DroSec_CAF1 6934 100 - 1 GCCAUGGCCCAUCGUCCGUAUCGUUAUCGGGAUCGGGAAAUCAGUCAAAUCGGCAUACGCAACGAAAUCAGUACGUGGACCUGAUAGUAUGCCAUGGUUU ((((((((......((((((....)).))))((((((......(((.....))).((((..((.......)).))))..)))))).....)))))))).. ( -28.00) >DroEre_CAF1 6811 80 - 1 GCCAUGG--------CCGUAUCGUUAUCGGGAUCGCGGAA---------UCGGCAUACGAAACGAAAUCAGUACGUGGGCCUGAUA---CGCCAUGGUUU (((((((--------(.((((((....)(((..((((...---------(((.....))).((.......)).))))..)))))))---))))))))).. ( -29.50) >DroYak_CAF1 7432 80 - 1 GCCAUGG--------CCGUAUCGUUAUCGGGAUCGGGGAA---------UCGGCAUACGAAACGAAAUCAGUACGUGGACCUGAUA---GGCCAUGGUUU (((((((--------((...(((((.(((.(.((((....---------)))))...)))))))).(((((.........))))).---))))))))).. ( -30.10) >consensus GCCAUGG________CCGUAUCGUUAUCGGGAUCGGGAAA_________UCGGCAUACGAAACGAAAUCAGUACGUGGACCUGAUA___GGCCAUGGUUU ((((((((.......(((..(((....)))...))).............((((..((((..((.......)).))))...))))......)))))))).. (-20.74 = -21.30 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:05 2006