Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,205,461 – 1,205,569 |
Length | 108 |
Max. P | 0.526846 |
Location | 1,205,461 – 1,205,569 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 80.66 |
Mean single sequence MFE | -49.03 |
Consensus MFE | -31.73 |
Energy contribution | -34.03 |
Covariance contribution | 2.31 |
Combinations/Pair | 1.16 |
Mean z-score | -1.39 |
Structure conservation index | 0.65 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526846 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1205461 108 - 22224390 ACAGCGCCCGC----------ACUGCUAUCCUUGGACGGCACCCGGCAGGUGGAUCAGCGCCACCUACUGGGGCUCUUACGUGGUGCAGCGGACAUCGAAGAGCAGGUGCAGCAGCUG .((((((..((----------(((((..((....))..)).(((((.((((((.......)))))).)))))((((((.((..((.(...).))..)))))))).))))).)).)))) ( -48.80) >DroSec_CAF1 15119 108 - 1 ACAGCGCCCGC----------ACUGCUAUCCUUGGACGGCACCCGGCAGGUGGAUCAGGGCCAUCUACUGGGGCUCCUGCGUGGUGCAGCUGACAUCGAAGAGCAGGUGCAGCAGCUG .((((((((((----------..(((..((....))..)))(((((.((((((.......)))))).)))))((....)))))).)).((((.((((........)))))))).)))) ( -49.50) >DroSim_CAF1 7701 108 - 1 ACAGCGCCCGC----------ACUGCUAUCCUUGGACGGCACCCGGCAGGUGGAUCAGGGCCAUCUACUGGGGCUCCUGCGUGGUGCAGCUGACAUCGAAGAGCAGGUGCAGCAGCUG .((((((((((----------..(((..((....))..)))(((((.((((((.......)))))).)))))((....)))))).)).((((.((((........)))))))).)))) ( -49.50) >DroEre_CAF1 15786 108 - 1 CCAGCGCCCGC----------ACUGCUCUCCUUGGACGGCACCCAGCUGGUGGAUCAGGGCCAGCUCCUGGGGCUCCUGCGAGGUGCAGCGGACAUCGAAGAGCAGGUGCUGCAGCUG .((((((..((----------(((((((((..((..(((((((..((.((.(..((((((....).)))))..).)).))..)))))..))..))..).)))))).)))).)).)))) ( -49.80) >DroYak_CAF1 19792 108 - 1 CCAGCGCCCAC----------ACUGCUCUCCUUGGACGGCACCCGACUGGCGGAUCAGGGGCAUCUCCUGGGUCUGCUGCGAGGUGCAGCGGACAUCGAAGAGCAGGUGCUGCAGCUG .((((((.(((----------.((((((((..((..(((((((((...(((((((((((((...))))).)))))))).)).)))))..))..))..).))))))))))..)).)))) ( -54.00) >DroPer_CAF1 63583 118 - 1 UCACCACCCGCCGACCAGCGAUCUGCAAUCAGUGGACGGCACCAGGCAGCUCGACCAGGAGGCUUUGCUCAGUCAGCUGCGCGGCGCGGAGAGCAUCGAGCAACAGGUGCAACUACUG ......(((((((....((..((..(.....)..))..)).....((((((.(((...(((......))).))))))))).))))).))...(((((........)))))........ ( -42.60) >consensus ACAGCGCCCGC__________ACUGCUAUCCUUGGACGGCACCCGGCAGGUGGAUCAGGGCCAUCUACUGGGGCUCCUGCGUGGUGCAGCGGACAUCGAAGAGCAGGUGCAGCAGCUG ...((((((((............(((..((....))..)))(((((.((((((.......)))))).)))))......))).))))).((((.((((........))))))))..... (-31.73 = -34.03 + 2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:03 2006