Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,866,335 – 10,866,449 |
Length | 114 |
Max. P | 0.961992 |
Location | 10,866,335 – 10,866,449 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.30 |
Mean single sequence MFE | -27.96 |
Consensus MFE | -23.00 |
Energy contribution | -23.48 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.06 |
Mean z-score | -2.00 |
Structure conservation index | 0.82 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961992 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10866335 114 - 22224390 GCCCCAUAAAUGGC--AACUAUUUAACUAACUUGAACUUGCAAAUUGAGGCUAAAGUCU---GGGCCAAGAAAAAAGCGAAAACUUUUCACUGCCCAUUGCCAA-AACAAGUGUCAAGUG (((........)))--.............(((((((((((.......((((....))))---((((..((..(((((......)))))..))))))........-..))))).)))))). ( -26.60) >DroSec_CAF1 19975 114 - 1 GCGCCAUAAAUGGC--AACUAUUUAACUAACUUGAACUUGCAAAUUGAGGGUAAAGUCU---GGGCCAAGAAAAAAGCGAAAACUUUUCACUGCCCAUUGCCAA-AACAAGUGUCAAGUG ..((((....))))--.............(((((((((((....((...(((((....(---((((..((..(((((......)))))..))))))))))))..-))))))).)))))). ( -28.90) >DroSim_CAF1 21499 114 - 1 GCGCCAUAAAUGGC--AACUAUUUAACUAACUUGAACUUGCAAAUUGAGGCUAAAGUCU---GGGCCAAGAAAAAAGCGAAAACUUUUCACUGCCCAUUGCCAA-AACAAGUGUCAAGUG ..((((....))))--.............(((((((((((.......((((....))))---((((..((..(((((......)))))..))))))........-..))))).)))))). ( -28.50) >DroYak_CAF1 20129 114 - 1 GCCCCAUAAAUGGC--AACUAUUUAACUAACUUGAACUUGCAAAUUGAGGCUAAAGUCU---GGGCCAAGAAAAAAGCGAAAACUUUUCACUGCCCAUUGCCAA-AACAAGUGUCAAGUG (((........)))--.............(((((((((((.......((((....))))---((((..((..(((((......)))))..))))))........-..))))).)))))). ( -26.60) >DroAna_CAF1 18725 119 - 1 GCGGCUUAAAUGGCACAACUAUUUAACUAACUUGAACUCACAAAUCGAGGCUAAAGUCUUUGGGGCCAAGGA-GAGGCGCUAACUUUUCACUGCCCAUUGCCAAAAACAAGUGUCAAGUG ..((.((((((((.....)))))))))).((((((...(((.....(((((....)))))..((((...(((-(((.......))))))...))))..............))))))))). ( -29.20) >consensus GCGCCAUAAAUGGC__AACUAUUUAACUAACUUGAACUUGCAAAUUGAGGCUAAAGUCU___GGGCCAAGAAAAAAGCGAAAACUUUUCACUGCCCAUUGCCAA_AACAAGUGUCAAGUG ......(((((((.....)))))))....(((((((((((.......((((....))))...((((..((..(((((......)))))..))))))...........))))).)))))). (-23.00 = -23.48 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:17 2006