Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,862,472 – 10,862,570 |
Length | 98 |
Max. P | 0.515818 |
Location | 10,862,472 – 10,862,570 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 84.03 |
Mean single sequence MFE | -21.03 |
Consensus MFE | -13.48 |
Energy contribution | -14.29 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.04 |
Mean z-score | -1.62 |
Structure conservation index | 0.64 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.515818 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10862472 98 + 22224390 AAUAUUGAAAACUACUAUAUAUGG-A-----------------UGUUUGGAUAUAGGUGAAAAUGUUGGUUGGUGCACAGGGCGAAGUCAAACCAAUUGGCAAAAGUAAAUUUCAU .....(((((..((((...(((..-(-----------------(((....))))..)))....(((..((((((..((........))...))))))..)))..))))..))))). ( -19.30) >DroSec_CAF1 16241 99 + 1 AAUAUUGAAAACUACUAUAUAUGGUA-----------------UUUUUGAAUAUAGGUGAAAAUGUUGGUUGGUGCGCAGGGCGAAGUCAAACCAAUUGGCAAAAGUAAAUUUCAU .(((((.((((.(((((....)))))-----------------.)))).)))))..((((((.(((..((((((.(((...))).......))))))..)))........)))))) ( -22.10) >DroSim_CAF1 18207 99 + 1 AAUAUUGAAAACUACUAUAUAUGGUA-----------------UUUUUGAAUAUAGGUGAAAAUGUUGGUUGGUGCGCAGGGCGAAGUCAAACCAAUUGGCAAAAGUAAAUUUCAU .(((((.((((.(((((....)))))-----------------.)))).)))))..((((((.(((..((((((.(((...))).......))))))..)))........)))))) ( -22.10) >DroYak_CAF1 16378 112 + 1 AAUAUUGAAAACUACUAUAUGUACUAUAUAUACUAUAUAUGAAAGUUUGAAUAUAGGUAGAUAUGUUG----GUGUGUAGGGCGAAGUCAAACCAAUUGGCAAAAGUAAAUUUCAU .....(((((..((((.((..((((((((((.((((((((....))....))))))....))))).))----)))..)).......(((((.....)))))...))))..))))). ( -20.60) >consensus AAUAUUGAAAACUACUAUAUAUGGUA_________________UGUUUGAAUAUAGGUGAAAAUGUUGGUUGGUGCGCAGGGCGAAGUCAAACCAAUUGGCAAAAGUAAAUUUCAU .....(((((..((((.(((((............................)))))........(((..((((((......(((...)))..))))))..)))..))))..))))). (-13.48 = -14.29 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:07 2006