Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,854,314 – 10,854,460 |
Length | 146 |
Max. P | 0.827233 |
Location | 10,854,314 – 10,854,420 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 90.60 |
Mean single sequence MFE | -31.50 |
Consensus MFE | -25.48 |
Energy contribution | -25.98 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.11 |
Mean z-score | -1.91 |
Structure conservation index | 0.81 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.827233 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10854314 106 + 22224390 UUGUGUGGGAGUGGGUUUUUUUUGUGGUU-UGGAGGGCUUGAAAGGGCGUCAUUAAAAAUCAUUAAAAAUCAGUGAAGCAUCGCAAAUGCGACCGCUGUCCCUU-UUG ......((((...(((((((...((((((-(.((.(.(((....)))).)).....))))))).))))))).....(((.((((....))))..))).))))..-... ( -28.00) >DroSec_CAF1 8174 105 + 1 UUGUGUGGGAGUGGGAUU--UUUGUGGUUGUGGAGGGCUCGAAAGGGCGUCAUUAAAAAUCAUUAAAAAUCAGUGAAGCAUCGCAAAUGCGACCGCUGUCCCUU-UUG ......((((((((((((--(((((((((...((((((((....)))).)).))...))))).)))))))).........((((....))))))))..))))..-... ( -34.10) >DroSim_CAF1 8291 105 + 1 UUGUAUGGGAGUGGGAUU--UUUGUGGUUGUGGAGGGCUCGAAAGGGCGUCAUUAAAAAUCAUUAAAAAUCAGUGAAGCAUCGCAAAUGCGACCGCUGUCCCUU-UUG ......((((((((((((--(((((((((...((((((((....)))).)).))...))))).)))))))).........((((....))))))))..))))..-... ( -34.10) >DroYak_CAF1 8339 99 + 1 -----UAGGAGUGGGAUU--UUUGUGGUC--GGCGGACUCGAAAGGGCGUCAUUAAAAAUCAUUAAAAGUCAGUGAAGCAUCGCAAAUGCGACCGCUGUCCUUUUUUU -----.(((((.(((((.--...((((((--((((..(((....)))))))........(((((.......))))).((((.....)))))))))).))))).))))) ( -29.80) >consensus UUGUGUGGGAGUGGGAUU__UUUGUGGUU_UGGAGGGCUCGAAAGGGCGUCAUUAAAAAUCAUUAAAAAUCAGUGAAGCAUCGCAAAUGCGACCGCUGUCCCUU_UUG ......((((((((((((.....((((((...((.(.(((....)))).))......))))))....)))).........((((....))))))))..))))...... (-25.48 = -25.98 + 0.50)
Location | 10,854,343 – 10,854,460 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.83 |
Mean single sequence MFE | -36.45 |
Consensus MFE | -26.56 |
Energy contribution | -26.80 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.93 |
Structure conservation index | 0.73 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588904 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10854343 117 + 22224390 --UGGAGGGCUUGAAAGGGCGUCAUUAAAAAUCAUUAAAAAUCAGUGAAGCAUCGCAAAUGCGACCGCUGUCCCUU-UUGGCCAACCGUUUGAAAGGUUCAGCAUUUUUACGCCACUUGC --..((((((.(((((((((.(((((.................))))).)).((((....))))))((((..((((-(..(.(....).)..)))))..))))..))))).))).))).. ( -35.13) >DroSec_CAF1 8201 118 + 1 -GUGGAGGGCUCGAAAGGGCGUCAUUAAAAAUCAUUAAAAAUCAGUGAAGCAUCGCAAAUGCGACCGCUGUCCCUU-UUGGCCAACCGUUUGAAAGGUUCAGCAUUUUUACGCCACUUGC -((((...((((....))))........................((((((..((((....))))..((((..((((-(..(.(....).)..)))))..))))..)))))).)))).... ( -37.20) >DroSim_CAF1 8318 118 + 1 -GUGGAGGGCUCGAAAGGGCGUCAUUAAAAAUCAUUAAAAAUCAGUGAAGCAUCGCAAAUGCGACCGCUGUCCCUU-UUGGCCAACCGUUUGAAAGGUUCAGCAUUUUUACGCCACUUGC -((((...((((....))))........................((((((..((((....))))..((((..((((-(..(.(....).)..)))))..))))..)))))).)))).... ( -37.20) >DroYak_CAF1 8361 117 + 1 ---GGCGGACUCGAAAGGGCGUCAUUAAAAAUCAUUAAAAGUCAGUGAAGCAUCGCAAAUGCGACCGCUGUCCUUUUUUUGGCAACCGUUUGAAAGGUUCAGCAUUUUUACGCCACUUGC ---(((((.(((....))))(((........(((((.......))))).((((.....))))))).((((.((((((..(((...)))...))))))..)))).......))))...... ( -33.40) >DroAna_CAF1 2811 118 + 1 CAGGACGGGGUCGAAAGGGCGUCAUUAAAAAUCAUUAAAAACCAGUGAAGCGUCGCAAAUGCGACCGCUGUCCCUU--CGGCGCUGAGUUUGAAAGGUUCAGCAUUUUUACGCCACUUGC ..((.((..((((((.((((...........(((((.......)))))((((((((....)))).)))))))).))--))))((((((..(...)..)))))).......))))...... ( -39.30) >consensus __UGGAGGGCUCGAAAGGGCGUCAUUAAAAAUCAUUAAAAAUCAGUGAAGCAUCGCAAAUGCGACCGCUGUCCCUU_UUGGCCAACCGUUUGAAAGGUUCAGCAUUUUUACGCCACUUGC ..............((((((((.........(((((.......)))))....((((....))))..((((..((((...(((.....)))...))))..))))......))))).))).. (-26.56 = -26.80 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:56 2006