Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,846,266 – 10,846,371 |
Length | 105 |
Max. P | 0.543002 |
Location | 10,846,266 – 10,846,371 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 87.19 |
Mean single sequence MFE | -29.58 |
Consensus MFE | -21.80 |
Energy contribution | -23.55 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.44 |
Structure conservation index | 0.74 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543002 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10846266 105 - 22224390 CGUAAUUAAAACCGCACGGUAAUGGACUUAGUUGCCCCGGGGCCAACU-CCCAAAAAUCGUA---------UCCAUCCGAAAGAAGGAAACUAUUCGAAUUUGCCGUUGUGCACA ............(((((((((((((....(((((((....)).)))))-.)))......((.---------(((...(....)..))).)).........)))))).)))).... ( -25.40) >DroSec_CAF1 323 108 - 1 CGUAAUUAAAACCGCACGGUAAUGGACUUAGUGGCCCCGGGGCCAACU-CCCAAAAAUCGUAGCGCCCAAUUCCAUCCGAAUGAAGGAAACUAU------UUGCCGUUGUGCACA ............(((((((((((((......(((((....)))))...-.)))......((((..((..((((.....))))...))...))))------)))))).)))).... ( -27.80) >DroSim_CAF1 382 114 - 1 CGUAAUUAAAACCGCACCGUAAUGGACUUAGUGGCCCCGGGGCCAACU-CCCAAAAAUCGUAGCGCCCAAUUCCAUCCGAAUGAAGGAAACUAUUCGAAUUUGCCGUUGUGCACA .((..........((..((...(((......(((((....)))))...-.))).....))..))((.((((..((..(((((..((....)))))))....))..)))).)))). ( -27.00) >DroYak_CAF1 377 115 - 1 CGUAAUUAAAACCGCACGGUAAUGGACUUAGUGGCCCCAGGGCCAACAAACCAAAAACCGUGGCGCCCAAUUCAAUCCGAAAGGAGAAAACUAUUCGAAUUUGCCGUCGUGCAGA .............(((((((..(((......(((((....))))).....)))...)))..((((.(.(((((..(((....)))(((.....)))))))).).))))))))... ( -38.10) >consensus CGUAAUUAAAACCGCACGGUAAUGGACUUAGUGGCCCCGGGGCCAACU_CCCAAAAAUCGUAGCGCCCAAUUCCAUCCGAAAGAAGGAAACUAUUCGAAUUUGCCGUUGUGCACA ............(((((((((((((......(((((....))))).....)))........................(((((..((....)))))))...))))))).))).... (-21.80 = -23.55 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:39 2006