Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,844,205 – 10,844,323 |
Length | 118 |
Max. P | 0.550860 |
Location | 10,844,205 – 10,844,323 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.74 |
Mean single sequence MFE | -32.03 |
Consensus MFE | -27.54 |
Energy contribution | -27.77 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.06 |
Mean z-score | -1.86 |
Structure conservation index | 0.86 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.550860 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10844205 118 - 22224390 UUUGUUUACACUCUGCGCUCUCCGUAUUCCAUAGGCGACAUUUUUUAUGGUCCUCAUGGUGGGCCAACAUGCGUC--CCGAUAAGCGAAAUCAAAUGUCAAAGUGAGAAUGUAAACACUC ..((((((((.(((.((((..((..........)).(((((((....((((((.......))))))...(((...--.......))).....)))))))..))))))).))))))))... ( -31.50) >DroSec_CAF1 22998 120 - 1 UUUUUUUACAAUCUGCGCUUUCCGUAUUCCAUAGGCGACAUUUUUUAUGGUCCUCAUGGUGGGCCAACAUGCGUCCCCCGAUAAGCGAAAUCAAAUGUCAAAGUGAGAAUGUAAACACUC ....((((((.(((.((((((((..........)).(((((((....((((((.......))))))...((((((....)))..))).....)))))))))))))))).))))))..... ( -29.10) >DroYak_CAF1 19190 118 - 1 UUUGUUUACACUCUGCGCAUUCCGCCAACCAUGGGCGACAUUUUUUAUGGUUCUCAUGGUGGCCCAACAUGCGUC--CCGAUAAGCGAAAUCAAAUGUCAAAGUGAGAAUGUAAACACUC ..((((((((.(((((((((...((((.(((((((...(((.....)))...))))))))))).....)))))).--..((((...(....)...))))......))).))))))))... ( -35.50) >consensus UUUGUUUACACUCUGCGCUUUCCGUAUUCCAUAGGCGACAUUUUUUAUGGUCCUCAUGGUGGGCCAACAUGCGUC__CCGAUAAGCGAAAUCAAAUGUCAAAGUGAGAAUGUAAACACUC ..((((((((.(((.(((.....((.........))(((((((....((((((.......))))))...(((............))).....)))))))...)))))).))))))))... (-27.54 = -27.77 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:37 2006