Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,841,291 – 10,841,410 |
Length | 119 |
Max. P | 0.513501 |
Location | 10,841,291 – 10,841,410 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.24 |
Mean single sequence MFE | -34.33 |
Consensus MFE | -22.11 |
Energy contribution | -22.48 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.09 |
Mean z-score | -1.91 |
Structure conservation index | 0.64 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.513501 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10841291 119 + 22224390 GUUUAAUGUAUCGCAAUAAUCGAGCAAUCAAUCAAUCAGGCAAGUAUUUGCCAGUUCUACUUGCUGGGUAUUCGGCAAGUCGACUCGUUGCUCGAAAAAAG-GUCAAAUCCUUUGGCCGG ...................(((((((((..........(((((....)))))((((..(((((((((....))))))))).)))).))))))))).....(-(((((.....)))))).. ( -37.60) >DroSec_CAF1 20092 118 + 1 GGUUAAUGUAUCGCAAUAAUCGAGCAAUCAAUCAAUCAGGCCAGUCCUUGCCAGUCCUACUUGCUGGGUAUUUGGCAAGUCGACUCGUUGCUCGAAA-AAG-GUCAAAUCCUUUGGCCGG ((((...............(((((((((..........(((........)))((((..((((((..(....)..)))))).)))).))))))))).(-(((-(......))))))))).. ( -36.60) >DroSim_CAF1 964 108 + 1 GGUUAAUGUAUCGCAAUAAUCGAGCAAUCAAUCAAUCAGGCCAG----------UCCUACUUGCUGGGUAUUCGGCAAGUCGACUCGUUGCACGAAA-AAG-GUCAAAUCCUUUGGCCGG (((((.((.....)).)))))((....)).........((((.(----------((..(((((((((....))))))))).)))(((.....))).(-(((-(......))))))))).. ( -32.20) >DroYak_CAF1 9105 110 + 1 GGUUAAUGUAUCGCAAUAAUCGAGCAAUCAAUCAAUCAGGUCAG----------CUCUACUUGCUGGGUAUUCAGCAAGUCGACUCGCUGCUCCAAAAAAGGCUCAAAUCCUUUGGCCGG (((((.((.....)).)))))((....)).........((.(((----------(((.(((((((((....))))))))).))...))))..))......(((.(((.....)))))).. ( -30.90) >consensus GGUUAAUGUAUCGCAAUAAUCGAGCAAUCAAUCAAUCAGGCCAG__________UCCUACUUGCUGGGUAUUCGGCAAGUCGACUCGUUGCUCGAAA_AAG_GUCAAAUCCUUUGGCCGG ((((((((.....))....(((((((((.(.((....(((...............)))(((((((((....))))))))).)).).))))))))).................)))))).. (-22.11 = -22.48 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:28 2006