Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,811,478 – 10,811,575 |
Length | 97 |
Max. P | 0.500000 |
Location | 10,811,478 – 10,811,575 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 75.77 |
Mean single sequence MFE | -30.67 |
Consensus MFE | -17.32 |
Energy contribution | -16.63 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.52 |
Mean z-score | -1.46 |
Structure conservation index | 0.56 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10811478 97 + 22224390 CCUGCCACCCAGGAAGGCACUUGAAGUCACCUUUUUCAUCGCAAACAUAGUGUGCAUUUUGCCGCUGUUUCUGUGAUUUCUCACAGGCCUUA----GGUAA--- ((((.....))))(((((...(((((.......)))))........((((((.((.....))))))))..((((((....))))))))))).----.....--- ( -26.60) >DroVir_CAF1 24827 97 + 1 CCUGCCAGCCAGGCAGGCAUUUCACGUCGCCCUUUUCGUCGCAGGUGUAGUGCGAGUUCAUCUUGUACUUUUGCGUCUUUUCGCAGGCCUGU----GGCAA--- ((((((.....))))))....................(((((((((..((((((((.....)))))))).(((((......)))))))))))----)))..--- ( -39.80) >DroEre_CAF1 31702 96 + 1 CCUGCCAGCCAGGAAGACACUUAAAGUCGCCCUUUUCAUCGCAAAUGUAGUGUGCGUUUUGCCGCUGCUUCUGCGAUUUCUCACAGGCCUUA----GG-AU--- ((((...((((((..(((.......)))..)))....((((((...((((((.((.....))))))))...))))))........)))..))----))-..--- ( -30.50) >DroYak_CAF1 30533 97 + 1 CCUGCCACCCAGGCAGACACUUGAAGUCGCCCUUUUCAUCGCAAACAUAGUGUGCAUUUUGCCGCUGCUUCUGCGAUUUCUCACACGCCUUG----GGUAA--- ......((((((((.(((.......))).........((((((....(((((.((.....)))))))....)))))).........))).))----)))..--- ( -29.60) >DroMoj_CAF1 28774 100 + 1 CCUGCCAGCCGGGCAGGCACUUCACGUCCCCCUUCUCGUCGCAGCUGUAGUGCGAGUUCAUCUGGUACUUGGGCGACUUCUCGCAGGCCUGU----GCCAAUGG ((((((.....)))))).................((((.(((.......)))))))..(((.((((((..((((((....))))...)).))----))))))). ( -31.60) >DroAna_CAF1 26457 101 + 1 CCUGCCACCCAGGGAGGCACUUGAAGUCGCCCUUCUCGUCGCAGACGUAGUGCACACUUUGCUUUUGUUUUUGGGAUUUCUCACAGGCCUAUGAAUGGUAA--- ..(((((..((...((((.((.((((((((.((...((((...)))).)).))...((..((....))....))))))))....)))))).))..))))).--- ( -25.90) >consensus CCUGCCACCCAGGCAGGCACUUGAAGUCGCCCUUUUCAUCGCAAACGUAGUGCGCAUUUUGCCGCUGCUUCUGCGAUUUCUCACAGGCCUUU____GGUAA___ ...(((....(((..(((.......)))..)))....((((((...((((((.((.....))))))))...))))))........)))................ (-17.32 = -16.63 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:17 2006