Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,794,310 – 10,794,428 |
Length | 118 |
Max. P | 0.598795 |
Location | 10,794,310 – 10,794,428 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.98 |
Mean single sequence MFE | -30.45 |
Consensus MFE | -23.88 |
Energy contribution | -24.88 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.03 |
Mean z-score | -1.96 |
Structure conservation index | 0.78 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598795 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10794310 118 - 22224390 GUCAACCGUUUUUAUGCUUGAGGUGAUAUUACAGCUUUU--GUCUGCGCGAUAUAAAAAUAACACUUUGAAAUUGCCCAGCUGCCGUAUUAUUAUCUUGAGGCCGUAAAAACAUUAGCAG .......(((((((((((..((((((((.(((.((....--(.(((.(((((...(((.......)))...))))).)))).)).))).))))))))..))..)))))))))........ ( -31.80) >DroSec_CAF1 10789 117 - 1 GUCAAUCGAUUUUAUGCUUGAGGUGAUAUUACAGCUUUU--GUCUGCGCGAUAUGAAAAUAACACUUU-AAAUUGCCCAGCUGCCAUAUUAUUAUCUUGUGGCCGUAAAAACAUUAGCAG ((((.((((........))))..))))......(((..(--(((((.(((((.((((........)))-).))))).)))..((((((.........)))))).......)))..))).. ( -24.70) >DroEre_CAF1 17050 117 - 1 GUCAAUCGUUUUUAUGCUUGAGGUGAUAUUAUAGCUUU---GUCUGCGCGAUAUAAAAGUAACACUUUGAAAUUGCCCAGCUGCCAUAUUAUUAUCUUGAGGCCGUAAAAACAUUAGCAG (..(((.(((((((((((..((((((((.(((.((...---(.(((.(((((...((((.....))))...))))).)))).)).))).))))))))..))..))))))))))))..).. ( -35.40) >DroYak_CAF1 17222 120 - 1 GUCAAUCGUUUUUCUGCUUGAGGUGAUAUUACAGCUUUUGUGGCUGCGCGAUAUAAAAAUAACACUUUGAAAUUGGCCAGCUGCCGUAUUAUUAUCUUGAGGCCGUAAAAACAUUAGCAG (..(((.(((((((.(((((((((((((.(((.((......(((((.((.(.....(((......))).....).))))))))).))).))))))))).)))).).)))))))))..).. ( -29.90) >consensus GUCAAUCGUUUUUAUGCUUGAGGUGAUAUUACAGCUUUU__GUCUGCGCGAUAUAAAAAUAACACUUUGAAAUUGCCCAGCUGCCAUAUUAUUAUCUUGAGGCCGUAAAAACAUUAGCAG .......(((((((((((((((((((((.(((.((......(.(((.(((((...(((.......)))...))))).)))).)).))).))))))))))))..)))))))))........ (-23.88 = -24.88 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:12 2006