Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,782,218 – 10,782,320 |
Length | 102 |
Max. P | 0.623225 |
Location | 10,782,218 – 10,782,320 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.89 |
Mean single sequence MFE | -25.80 |
Consensus MFE | -25.80 |
Energy contribution | -25.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -0.84 |
Structure conservation index | 1.00 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.623225 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10782218 102 + 22224390 AAAAACAAGUUCCUCUAUUGACUCUGUUAAUUCGUGAGCACUUGCCGGGCCAGUUGGCAUCGCACAGAUUCGUUACUGGGCCAGGCCCAAACUU------------------CAACUCCA .....(((((..(((.((((((...))))))....))).)))))..(((((...((((......(((........))).)))))))))......------------------........ ( -25.80) >DroSec_CAF1 31675 120 + 1 AAAAACAAGUUCCUCUAUUGACUCUGUUAAUUCGUGAGCACUUGCCGGGCCAGUUGGCAUCGCACAGAUACGUUACUGGGCCAGGCCCAAACUUCAUUUCCAACUCCAACUCCAACUCCA .....(((((..(((.((((((...))))))....))).)))))..(((((...((((......(((........))).)))))))))................................ ( -25.80) >DroSim_CAF1 30415 120 + 1 AAAAACAAGUUCCUCUAUUGACUCUGUUAAUUCGUGAGCACUUGCCGGGCCAGUUGGCAUCGCACAGAUACGUUACUGGGCCAGGCCCAAGCUUCAUUUCCAACUCCAACUCCAACUCCA .....(((((..(((.((((((...))))))....))).)))))..(((((...((((......(((........))).)))))))))................................ ( -25.80) >consensus AAAAACAAGUUCCUCUAUUGACUCUGUUAAUUCGUGAGCACUUGCCGGGCCAGUUGGCAUCGCACAGAUACGUUACUGGGCCAGGCCCAAACUUCAUUUCCAACUCCAACUCCAACUCCA .....(((((..(((.((((((...))))))....))).)))))..(((((...((((......(((........))).)))))))))................................ (-25.80 = -25.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:02 2006