Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,186,961 – 1,187,222 |
Length | 261 |
Max. P | 0.876027 |
Location | 1,186,961 – 1,187,071 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 89.09 |
Mean single sequence MFE | -38.43 |
Consensus MFE | -33.17 |
Energy contribution | -32.73 |
Covariance contribution | -0.43 |
Combinations/Pair | 1.17 |
Mean z-score | -2.35 |
Structure conservation index | 0.86 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.876027 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1186961 110 + 22224390 CAUCGCCAUCUUUCUGCUUGCCACUCUCGGUGGUGACAUUUUCCACGCUCUGACGCCUUUCUUUCAGAGUCUCAUCUUGGCCACUCUGAAGGGACUGCAGAUAGGCGGCG ...((((..((.((((((..((((.....))))..)..........((......))..((((((((((((..(......)..))))))))))))..))))).))..)))) ( -38.90) >DroSec_CAF1 22841 110 + 1 CAUCGCCAUCUUUCUGCUUACCACUCUCGGUGGUGACAUUUUCCACGCUUUGACGCCUUGCUUUCAGAGUCUCAUCUUGGCCACUCUGAAGGGACUGCAGAUAGGCGGCG ...((((..((.((((((((((((.....)))))))....((((..((......))......((((((((..(......)..))))))))))))..))))).))..)))) ( -38.30) >DroEre_CAF1 22188 110 + 1 CCUCACCAUCCCUCUGCUUGCCACUCUCCGUGGUGACAUUUGCCACGCUCUGCCGCCUCGCCUUCAGGGUCUCGUCUUGCCCAUUCUGAAGGGACUGCAGGUAGGCGGCA ..................((((.......((((..(...)..))))((.(((((((.((.((((((((((........))))....))))))))..)).))))))))))) ( -38.10) >consensus CAUCGCCAUCUUUCUGCUUGCCACUCUCGGUGGUGACAUUUUCCACGCUCUGACGCCUUGCUUUCAGAGUCUCAUCUUGGCCACUCUGAAGGGACUGCAGAUAGGCGGCG ....(((..((.((((((((((((.....)))))))..........((......))....((((((((((............))))))))))....))))).))..))). (-33.17 = -32.73 + -0.43)
Location | 1,187,071 – 1,187,185 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.20 |
Mean single sequence MFE | -42.98 |
Consensus MFE | -31.61 |
Energy contribution | -30.92 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.27 |
Mean z-score | -1.60 |
Structure conservation index | 0.74 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.628825 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1187071 114 + 22224390 UCUGGAUUGGGCCUUGGACUUGAUGUCGCUGUGGUUACCUGGUCCAAGCUCACAUUGAGCUGUUGCAGUUCUUGGAGAUUGCUGAUCAGGCGCUGCAGCUCGCUGAGAUUGCUU------ ....((((.(((....(((.....)))((((..((..(((((((..(((((.....)))))...((((((......)))))).))))))).))..))))..)))..))))....------ ( -39.90) >DroSec_CAF1 22951 114 + 1 UCUGGAUUGGGCCUCGGACUCGACGUCGCUGUGGUUACCUGGUCCAAGCUCACAUUGAGCUGUUGCAGUUCUUGGAGAUUGCUGAUUAGGCGCUGCAGCUCGCUGAGAUUGCUU------ (((((........)))))((((.((..((((..((..(((((((..(((((.....)))))...((((((......)))))).))))))).))..)))).)).)))).......------ ( -39.00) >DroEre_CAF1 22298 114 + 1 UCUGGAUUGGGUAUCGCAGUUGACGUCGCUGUGGUUACCUGGUCCAAGCUCACAUUGAGCUGUUGCAGUUCUUGGAGAUUGCUGAUCAGGCGCUGAAGCUCGCUAAGAUUGCUU------ ..(((((..(((((((((((.......))))))).))))..)))))(((((.....)))))...(((((.(((((.((..(((..((((...))))))))).))))))))))..------ ( -45.70) >DroAna_CAF1 7583 114 + 1 UCCGGACUGGGCGUGGGAGU-GACCACCU-----UGACCUUGUCCAGGCUCACGUUGAGCUGCUGCAGCUCCUGGAGGUUACUGAUCAGACGCUGCAGUUCGCUCAGGUUGCCGCCACUG ...((((.((((((((....-..))))..-----.).))).)))).(((..((.((((((.((((((((..((((((....))..))))..))))))))..)))))))).)))....... ( -47.30) >consensus UCUGGAUUGGGCCUCGGACUUGACGUCGCUGUGGUUACCUGGUCCAAGCUCACAUUGAGCUGUUGCAGUUCUUGGAGAUUGCUGAUCAGGCGCUGCAGCUCGCUGAGAUUGCUU______ ...((((..((.........((....)).........))..)))).(((((.....)))))((((((((.(((((((....))..))))).))))))))..((.......))........ (-31.61 = -30.92 + -0.69)
Location | 1,187,111 – 1,187,222 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.10 |
Mean single sequence MFE | -41.12 |
Consensus MFE | -27.99 |
Energy contribution | -29.43 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.20 |
Mean z-score | -1.60 |
Structure conservation index | 0.68 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.562185 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1187111 111 + 22224390 GGUCCAAGCUCACAUUGAGCUGUUGCAGUUCUUGGAGAUUGCUGAUCAGGCGCUGCAGCUCGCUGAGAUUGCUU---------UUGGAGUCAUCCCUUUUUUCCUUGGGUGCCUCGGGCU (((((.(((((.....)))))((((((((.(((((((....))..))))).))))))))..((.......))..---------...(((.((.(((..........))))).)))))))) ( -37.30) >DroSec_CAF1 22991 111 + 1 GGUCCAAGCUCACAUUGAGCUGUUGCAGUUCUUGGAGAUUGCUGAUUAGGCGCUGCAGCUCGCUGAGAUUGCUU---------UUGGAGUCAUCCCUUUUUUCCUUGGGUGCCUCGGGCU (((((((((((.((.((((((((.((...((.....))..(((.....))))).)))))))).)).))..))))---------...(((.((.(((..........))))).)))))))) ( -37.00) >DroEre_CAF1 22338 111 + 1 GGUCCAAGCUCACAUUGAGCUGUUGCAGUUCUUGGAGAUUGCUGAUCAGGCGCUGAAGCUCGCUAAGAUUGCUU---------GUGGAGUCAUCCCGUUUUUUCUUGGCUGUCUCGGGCU ((((..(((((.....)))))...((((((......)))))).)))).(((.((((..(..(((((((..(..(---------(.(((....)))))..)..))))))).)..))))))) ( -36.70) >DroAna_CAF1 7617 114 + 1 UGUCCAGGCUCACGUUGAGCUGCUGCAGCUCCUGGAGGUUACUGAUCAGACGCUGCAGUUCGCUCAGGUUGCCGCCACUGGCGGGGGAGUUCUCCCGCUUCUCCUUGGGCGUC------U .((((((((..((.((((((.((((((((..((((((....))..))))..))))))))..)))))))).)))......((((((((....))))))))......)))))...------. ( -53.50) >consensus GGUCCAAGCUCACAUUGAGCUGUUGCAGUUCUUGGAGAUUGCUGAUCAGGCGCUGCAGCUCGCUGAGAUUGCUU_________GUGGAGUCAUCCCGUUUUUCCUUGGGUGCCUCGGGCU (((((.(((((.....)))))((((((((.(((((((....))..))))).))))))))..((.......))..............(((.(((((...........))))).)))))))) (-27.99 = -29.43 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:54 2006