Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,186,668 – 1,186,788 |
Length | 120 |
Max. P | 0.783392 |
Location | 1,186,668 – 1,186,788 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.39 |
Mean single sequence MFE | -44.88 |
Consensus MFE | -35.81 |
Energy contribution | -36.06 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.09 |
Mean z-score | -1.90 |
Structure conservation index | 0.80 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.783392 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1186668 120 + 22224390 UCGAACCACCACCUGGUCAUCGCCGUCACCCACUUCGAGGAACGAGUUCCAGUCGGCCAGGAAGUAAAAUCCAUUCUUCUUCUUGGGCGGCGGUGGCUCCUCGCUGACAGGAUCAGGUCC ..........((((((((.((((.((((((........((((....)))).((((.((((((((..............)))))))).)))))))))).....)).))...)))))))).. ( -44.04) >DroSec_CAF1 22548 120 + 1 UCGAACCACCACCUGGUCAUCGCCGUCACCCACUUCCAGGAACGAGUUCCAGUCGGCCAGGAAGUAAAAUCCAUUCUUCUUUUUGGCCGGCGGUGGUUCCUCGCUGACAGGAUCAGGUCC ..........((((((((.(((.((....(((((....((((....)))).(((((((((((((..............)))))))))))))))))).....)).)))...)))))))).. ( -45.34) >DroEre_CAF1 21889 120 + 1 UCGAACCACCACCUGGUCAUCGCCGUCACCCACUUCGAGGAACGAAUUCCAGUCGGCCAGGAAGUAAAAUCCAUUCUUCUUCUUUGGCGGCGGUGGCUCCUCGCUGACCGGAUCAGGUCC ..........((((((((..(((((((........(((((((....))))..)))(((((((((..............)))).))))))))))))((.....))......)))))))).. ( -38.24) >DroAna_CAF1 7156 120 + 1 CCGGACCACCACCUGGUCGUCGCCGUCGCCCACCUCCAGGAAGGAGUUCCAAUCGGCCAGGAAGUAGAAGCCGUUCUUCUUCUUUGGCGGCGGCGGCUCUUCGCUGACAGGAUCCGGUCC ..(((((....((((..((..(((((((((...((((.....)))).........(((((((((.((((....)))).)))).))))))))))))))....))....))))....))))) ( -51.90) >consensus UCGAACCACCACCUGGUCAUCGCCGUCACCCACUUCCAGGAACGAGUUCCAGUCGGCCAGGAAGUAAAAUCCAUUCUUCUUCUUGGGCGGCGGUGGCUCCUCGCUGACAGGAUCAGGUCC ..........((((((((.((((.((((((........((((....)))).((((.((((((((..............)))))))).)))))))))).....)).))...)))))))).. (-35.81 = -36.06 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:51 2006