Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,758,947 – 10,759,038 |
Length | 91 |
Max. P | 0.957774 |
Location | 10,758,947 – 10,759,038 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 94.87 |
Mean single sequence MFE | -17.90 |
Consensus MFE | -15.73 |
Energy contribution | -16.73 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.26 |
Structure conservation index | 0.88 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.794425 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10758947 91 + 22224390 CAAUUAAUCAAAGUAAAUAAAAAACACCUUUCGGUAUAUCCGAUAUGCCCAUCAAUGGCUAACGACUGCCACUUUGGCCAUAUAAUAAUAC ..............................((((.....))))((((.(((....((((........))))...))).))))......... ( -16.00) >DroSec_CAF1 8701 91 + 1 CAAUUAAUCAAAGUAAGUAAAAGGCACCUUUCGGUAUAACCUAUAUGCCCAUCAAUGGCUAACGAUUGCCACUUUGGCCAUAUAAUAAUGC ......................(((.......((((((.....))))))...(((((((........))))..))))))............ ( -16.50) >DroSim_CAF1 6005 91 + 1 CAAUUAAUCAAAGUAAGUAAAAGGCACCUUUCGGUAUAACCGAUAUGCCCAUCAAUGGCUAACGAUUGCCACUUUGGCCAUAUAAUAAUGC .......(((((((........((((....((((.....))))..)))).......(((........)))))))))).............. ( -21.20) >consensus CAAUUAAUCAAAGUAAGUAAAAGGCACCUUUCGGUAUAACCGAUAUGCCCAUCAAUGGCUAACGAUUGCCACUUUGGCCAUAUAAUAAUGC .......(((((((........((((....((((.....))))..)))).......(((........)))))))))).............. (-15.73 = -16.73 + 1.00)
Location | 10,758,947 – 10,759,038 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 94.87 |
Mean single sequence MFE | -26.13 |
Consensus MFE | -23.73 |
Energy contribution | -23.73 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.84 |
Structure conservation index | 0.91 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.957774 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10758947 91 - 22224390 GUAUUAUUAUAUGGCCAAAGUGGCAGUCGUUAGCCAUUGAUGGGCAUAUCGGAUAUACCGAAAGGUGUUUUUUAUUUACUUUGAUUAAUUG (((((...(((((.(((.((((((........))))))..))).)))))..)))))(((....)))......................... ( -25.50) >DroSec_CAF1 8701 91 - 1 GCAUUAUUAUAUGGCCAAAGUGGCAAUCGUUAGCCAUUGAUGGGCAUAUAGGUUAUACCGAAAGGUGCCUUUUACUUACUUUGAUUAAUUG .......((((((.(((.((((((........))))))..))).))))))(((...(((....))))))...................... ( -27.20) >DroSim_CAF1 6005 91 - 1 GCAUUAUUAUAUGGCCAAAGUGGCAAUCGUUAGCCAUUGAUGGGCAUAUCGGUUAUACCGAAAGGUGCCUUUUACUUACUUUGAUUAAUUG (((((....((((.(((.((((((........))))))..))).))))((((.....))))..)))))....................... ( -25.70) >consensus GCAUUAUUAUAUGGCCAAAGUGGCAAUCGUUAGCCAUUGAUGGGCAUAUCGGUUAUACCGAAAGGUGCCUUUUACUUACUUUGAUUAAUUG ........(((((.(((.((((((........))))))..))).)))))......((((....))))........................ (-23.73 = -23.73 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:26 2006