Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,757,820 – 10,757,923 |
Length | 103 |
Max. P | 0.884596 |
Location | 10,757,820 – 10,757,923 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 81.46 |
Mean single sequence MFE | -48.18 |
Consensus MFE | -34.07 |
Energy contribution | -33.52 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.45 |
Mean z-score | -2.40 |
Structure conservation index | 0.71 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.884596 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10757820 103 + 22224390 GCGCCCUCAGCGGUCACAUCUUUGGGGCGCAGCACCUGCAGCAGCUGCAGGUCAUCCAGCGGCUGCAGCAGCAGCGUGCCGCAAUGCUGGCCGCCCGCAACAC----- (((......((((((((((...((.(((((.((..((((.((((((((.((....)).)))))))).))))..))))))).))))).))))))).))).....----- ( -52.60) >DroVir_CAF1 6414 108 + 1 GCGCGCUCAGCGGCCACAUCUUUGGGGCGCAGCAUCUGCAACAGUUGCAGGUUAUCCAGCGUCUGCAGCAGCAGCGUGCUGCGAUGUUGGCGGCGCGCAACAGCGGCA (((((((..(((.((.((....)))).))).(((((((((.....)))))))....(((((((.((((((......)))))))))))))))))))))).......... ( -52.40) >DroPse_CAF1 22665 103 + 1 GCGCGCUGAGUGGCCACAUCUUCGGGGCUCAGCACCUGCAACAGCUGCAGGUGAUCCAGCGCCUCCAGCAGCAGCGCGCCGCGAUGCUGGCCGCCCGCAACAG----- ....((.(.(((((((((((...((.(((...((((((((.....))))))))....))).))....((.((.....)).)))))).)))))))).)).....----- ( -47.50) >DroWil_CAF1 3524 103 + 1 GUGCAUUGAGUGGACAUAUUUUUGGGGCACAGCAUUUGCAGCAGUUGCAGGUGAUUCAACGUUUGCAACAGCAACGUGCGGCCAUGUUGGCCGCUCGUAAUAG----- ((((...(((((....))))).....)))).((....)).((.((((((..((......))..)))))).)).(((.((((((.....)))))).))).....----- ( -38.80) >DroMoj_CAF1 5737 102 + 1 GUGCGCUCAGUGGUCACAUCUUUGGGGCGCAGCAUCUGCAACAGUUGCAGGUGAUACAGCGUCUGCAGCAGCAGCGUGCCGCAAUGUUGGCGGCGCGCAACG------ .(((((((...((......))...)))))))((....))....(((((((..(......)..)))))))....(((((((((.......)))))))))....------ ( -46.80) >DroAna_CAF1 5523 103 + 1 GCGCCCUGAGCGGCCACAUCUUCGGGGCCCAGCACCUGCAGCAGCUGCAGGUCAUCCAGCGAUUGCAGCAACAGCGGGCCGCCAUGCUGGCCGCUCGCAACGG----- .((...(((((((((((((....(((((((.((((((((((...))))))))......((.......))....))))))).))))).))))))))))...)).----- ( -51.00) >consensus GCGCGCUCAGCGGCCACAUCUUUGGGGCGCAGCACCUGCAACAGCUGCAGGUGAUCCAGCGUCUGCAGCAGCAGCGUGCCGCAAUGCUGGCCGCCCGCAACAG_____ (((......((((((((((...((.(((((.((....))....(((((((((........)))))))))......))))).))))).))))))).))).......... (-34.07 = -33.52 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:23 2006