Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,602,901 – 10,602,992 |
Length | 91 |
Max. P | 0.990095 |
Location | 10,602,901 – 10,602,992 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 94.90 |
Mean single sequence MFE | -35.68 |
Consensus MFE | -30.60 |
Energy contribution | -30.80 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.10 |
Structure conservation index | 0.86 |
SVM decision value | 2.20 |
SVM RNA-class probability | 0.990095 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10602901 91 + 22224390 AGGCGAA--CGGCCAAACAGGCUGGCGUUU-ACCGUUAUCGCAGCCGGUAGGGAUGGCACUUUCGCGUAACGGGAUGUGCUAGUGACAGCCAUU .(((...--(((((.....)))))(((...-........))).)))(((.(...(((((((..((.....))..).))))))....).)))... ( -32.20) >DroSec_CAF1 289 91 + 1 AGGCGAA--CGGCCAAACAGGCUGGCGUUU-ACCGUUAUCGCAGCCGGUAGGGAUGGCACUUUCGCGUAACGGGAAGUGCUAGUGACUGCCAUU .(((...--(((((.....)))))(((...-........))).)))(((((...((((((((((.((...))))))))))))....)))))... ( -38.70) >DroSim_CAF1 295 91 + 1 AGGCGAA--CGGCCAAACAGGCUGGCGUUU-ACCGUUAUCGCAGCCGGUAGGGAUGGCACUUUCGCCUAACGGGAAGUGCUAGUGACUGCCAUU .(((...--(((((.....)))))(((...-........))).)))(((((...((((((((.(.((....)))))))))))....)))))... ( -38.90) >DroEre_CAF1 289 91 + 1 AGGCGAA--CGGCCAAACAGGCUGGCCUUU-ACCGUUAUCGCAGCCGGUAGGGAUGGCACUUUCGAGUAACGGGAAGUGCUAGUGACAGCCCUU .(((...--..))).....(((((..((((-((((..........)))))))).((((((((((........))))))))))....)))))... ( -35.20) >DroYak_CAF1 299 94 + 1 AGGCGAACACGGCCAAACAGGCUGGCAUUUAACCGUUAUCGCAGCCCGUAGGGAUGGCACUUUCGAGUAACGGGAAGUGCUAGUGACAGCCAUU .(((...(((((((.....))))(((((((..(((((...((..(((...)))...))(((....)))))))).))))))).)))...)))... ( -33.40) >consensus AGGCGAA__CGGCCAAACAGGCUGGCGUUU_ACCGUUAUCGCAGCCGGUAGGGAUGGCACUUUCGCGUAACGGGAAGUGCUAGUGACAGCCAUU .(((.....(((((.....)))))..............((((..((....))..((((((((((........))))))))))))))..)))... (-30.60 = -30.80 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:05 2006