Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,577,267 – 10,577,381 |
Length | 114 |
Max. P | 0.855458 |
Location | 10,577,267 – 10,577,381 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.37 |
Mean single sequence MFE | -26.76 |
Consensus MFE | -18.08 |
Energy contribution | -18.00 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.22 |
Mean z-score | -2.27 |
Structure conservation index | 0.68 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.855458 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10577267 114 - 22224390 CUCUUUGCCAUGUGAGGUUUUCUUCUUCU---UUUUUCACACCCCCUCUACUAUUUUUUUAUACCCUGGCGAAGGGUAUUUCAAUAAGUUUUCUAGUUUUGUGGCUAAAAGAG---AUUA (((((((((((((((((............---..)))))).........(((........(((((((.....))))))).......)))...........)))))..))))))---.... ( -25.00) >DroSec_CAF1 17175 117 - 1 CUCUUUGCCAUGUGAGGUUUUCUUCUUCUUGUUUUUCCACACCACCCCUACUACUUUUUUAUACCCUUGCGAAGGGUAUUUCAAUAAGGUUUCCAGUUUUGUGGCCCACAGAG---AUUA .((((((......((((....))))...........(((((..((.......(((((...(((((((.....)))))))......))))).....))..)))))....)))))---)... ( -23.30) >DroSim_CAF1 19004 114 - 1 CUCUUUGCCAUGUGAGGUUUUCUUCUUCU---UUUUCCACACCCCCUCUACUACUUUUUUAUACCCUUGCGAAGGGUAUUUCAAUAAGGUUUCCAGUUUGGUGGCUCAUAGAG---AUUA ((((..((((.(((.((............---....)).)))..((...((((((((...(((((((.....)))))))......)))))....)))..))))))....))))---.... ( -24.59) >DroEre_CAF1 17192 114 - 1 CACUGUGCCAUGUGAGGUUUUCUUCUUCUU---UUGCAACACCCGCUCU---ACUUUUCUGUACCCUUGCGAAGGGUAUUUCAAUAAGGUUUCUAGUUUUGCGACUCAGGAAGAGGAUUA (((........))).((((((((((((...---((((((.((.......---(((((...(((((((.....)))))))......))))).....)).))))))...)))))))))))). ( -29.80) >DroYak_CAF1 18718 113 - 1 CUCUGUGCCAUGUGAGGUUUUCUUCCUCUUCU-UUUUAACACCCCCUCU---ACUUUUCUAUACCCUUGCAGAGGGUGUUUCAAUAAGGUUUUUAGUUUCGUGGCUCACGGAG---AUUA ((((((((((((.((((.......)))).(((-(...(((((((.(((.---................).)).))))))).....))))..........))))))..))))))---.... ( -31.13) >consensus CUCUUUGCCAUGUGAGGUUUUCUUCUUCUU__UUUUCCACACCCCCUCUACUACUUUUUUAUACCCUUGCGAAGGGUAUUUCAAUAAGGUUUCUAGUUUUGUGGCUCACAGAG___AUUA ((((..(((((..((((.......)))).........................(((....(((((((.....)))))))......)))............)))))....))))....... (-18.08 = -18.00 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:48 2006