Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,569,133 – 10,569,230 |
Length | 97 |
Max. P | 0.994802 |
Location | 10,569,133 – 10,569,230 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 76.57 |
Mean single sequence MFE | -14.08 |
Consensus MFE | -6.18 |
Energy contribution | -5.74 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.31 |
Mean z-score | -2.68 |
Structure conservation index | 0.44 |
SVM decision value | 2.51 |
SVM RNA-class probability | 0.994802 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10569133 97 + 22224390 ---------------ACAAAAGCCAUUGCCAAAAACAAAAAUAAAAUUAAGAAGACAGCUGAAAAAAAAAAAGUUGAAAUGCAAAAGAGACGCA-AAUUGUUAAUUGGCUAUU ---------------............(((((.(((((.................(((((...........)))))...(((.........)))-..)))))..))))).... ( -14.00) >DroVir_CAF1 16361 101 + 1 GGGAGGGGGGCAAUCACACAAAAUAUUAGC-------AAAAUAAAAUUUCAAAUAAAAGAAAAAA---CCUAUUUUUA--GCACAACGGACACAAAAUUGUUGAUUCGCUAUU ........((((((((.((((.......((-------((((((...((((........))))...---..))))))..--)).....(....)....))))))))).)))... ( -10.50) >DroSec_CAF1 9249 93 + 1 ---------------ACAAAAGCCAUUGCCAAAAACAAAAAUAAAAUUAACAAAACAGCAGAAAA----AAAGUUGAAAUGCAAAAGAGACGCA-AAUUGUUAAUUGGCUAUU ---------------.....((((.(((.......)))......(((((((((..((((......----...))))...(((.........)))-..)))))))))))))... ( -15.10) >DroSim_CAF1 8624 94 + 1 ---------------ACAAAAGCCAUUGCCAAAAACAAAAAUAAAAUUAACAAAACAGCAGAAAA---AAAAGUUGAAAUGCAAAAGAGACGCA-AAUUGUUAAUUGGCUAUU ---------------.....((((.(((.......)))......(((((((((..((((......---....))))...(((.........)))-..)))))))))))))... ( -15.00) >DroEre_CAF1 9245 93 + 1 ---------------ACAAAAGCCAUUGCCAAAAACAAAAAUAAAAUUAACAAAACAACGGAAA----AAAAGUUGAAAUGCAAAAGAGACGCA-AAUUGUUAAUUGGCUAUU ---------------.....((((.(((.......)))......(((((((((..((((.....----....))))...(((.........)))-..)))))))))))))... ( -15.80) >consensus _______________ACAAAAGCCAUUGCCAAAAACAAAAAUAAAAUUAACAAAACAGCAGAAAA___AAAAGUUGAAAUGCAAAAGAGACGCA_AAUUGUUAAUUGGCUAUU ....................(((((..............................((((.............))))............((((......))))...)))))... ( -6.18 = -5.74 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:43 2006