Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,543,210 – 10,543,323 |
Length | 113 |
Max. P | 0.568010 |
Location | 10,543,210 – 10,543,323 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 82.82 |
Mean single sequence MFE | -21.75 |
Consensus MFE | -16.04 |
Energy contribution | -17.85 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.21 |
Mean z-score | -1.53 |
Structure conservation index | 0.74 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568010 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10543210 113 - 22224390 AGCGGGAGCCACAAGCGAAACGGGGGAAAAAAGUCAGAGAAGCGUAGAAAUAUACACAGAAAA-UAGGGGGAUGCGUUUAAAGAAUUCAAAGUUUUGCUUGUGAUA-AUAAUAUC .((....))((((((((((((....(((.....((....(((((((....(((.........)-))......)))))))...)).)))...))))))))))))...-........ ( -25.70) >DroSec_CAF1 69615 115 - 1 AGCAGGAGCCACAAGCGAAACGGGGAAAAAAAGUCAGAGAAGCGUAGAAAUAUGCACAGAAAAAAAAGGGGAUGCAGUUGAAGAUCUCAAUGUUGUACUUGUGAUAAAUAAAAUC .((....))((((((...((((...................(((((....))))).............(((((..........)))))..))))...))))))............ ( -19.90) >DroSim_CAF1 73583 114 - 1 AGCAGGAGCCACAAGCGAAACGGGGAAAAAAAGUCAGAGAAGCGUAGAAAUAUGCACAGAAAA-AAAGGGGAUGCAGUUAAAGAUCUCAAUGUUGUACUUGUGAUAAAUAAAAUC .((....))((((((...((((...................(((((....)))))........-....(((((..........)))))..))))...))))))............ ( -19.90) >DroEre_CAF1 70566 110 - 1 AGCAGGAGCCACAAGCGAAACGAG-AAA-AAAGUCAGAGAAGCGUAGAAAUGCACGCAGAGAA-AACGGGCUUACUUUGUGAUAAUGUAAUUUUUUGCUUGUC-UAAAUA-UAUC .((....)).((((((((((....-...-.....((((((((((((....))).((.......-..)).)))).))))).............)))))))))).-......-.... ( -21.51) >consensus AGCAGGAGCCACAAGCGAAACGGGGAAAAAAAGUCAGAGAAGCGUAGAAAUAUACACAGAAAA_AAAGGGGAUGCAGUUAAAGAACUCAAUGUUGUACUUGUGAUAAAUAAAAUC .((....))((((((((((((....................(((((....))))).............(((((..........)))))...))))))))))))............ (-16.04 = -17.85 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:30 2006