Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,516,711 – 10,516,905 |
Length | 194 |
Max. P | 0.927239 |
Location | 10,516,711 – 10,516,825 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.23 |
Mean single sequence MFE | -23.44 |
Consensus MFE | -11.54 |
Energy contribution | -11.66 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.22 |
Mean z-score | -2.01 |
Structure conservation index | 0.49 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.927239 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10516711 114 + 22224390 UACACAAAACCAACCACCCGUUCUGUUCCCC-GCUUUUCUCUCGGUGUAGGCUCACAAAAUCGAAAUGUUAAAAAAAAAAAA----AAUGUAAAGAGCGAGAA-AAGGGGAGCAAAUUUU .......................((((((((-..(((((.(((.(((......))).........(((((............----)))))...))).)))))-..))))))))...... ( -23.80) >DroSec_CAF1 48313 96 + 1 UACGCAAAACCA----------------CCC-GCUUUUCUCUCGGUGUAGGCUCACAAAAUCGAAAUGUUGAAAAAAAAAAAUAUA------AAGAGCGAGAA-AAGGGGAGCAAAUUUU ............----------------(((-.((((((((.(.(((......)))....((...(((((..........))))).------..))).)))))-)))))).......... ( -19.50) >DroSim_CAF1 51803 102 + 1 UACGCAAAACCA----------------CCC-GCUUUUCUCUCGGUGUAGGCUCACAAAAUCGAAAUGUUGAAAAAAAAAAAUAUAAAUGCAAAGAGCGAGAA-AAGGGGAGCAAAUUUU ............----------------(((-.(((((((((((((...(.....)...))))).........................((.....)))))))-)))))).......... ( -20.60) >DroEre_CAF1 50284 106 + 1 -------ACCAACCCACCC-UCCUAUUCCCUAUUUUUUCUCUCGGUGUAGGCUCACAAAAUCGAAAUGUUGGA----AAAAACA-AAAUGGAAAGAGCGGGAG-AAGGGGCGCAAAUUUU -------...........(-((((.(((((..(((((((..(((((...(.....)...)))))..((((...----...))))-....)))))))..)))))-.))))).......... ( -24.00) >DroYak_CAF1 49780 100 + 1 -------CAGCACCCACCC-U-----------UUUUUUCGCUCUGUGUAGGCUCACAAAAUCGAAAUGUUGAACAAAAAAAGUA-AAAGGCAAAGAGAGGGAAAAAGGGGUGCAAAUUUU -------..((((((.(((-(-----------((((((.(((.((((......))))...((((....))))............-...)))))))))))))......))))))....... ( -29.30) >consensus UAC_CAAAACCA_CCACCC_U_______CCC_GCUUUUCUCUCGGUGUAGGCUCACAAAAUCGAAAUGUUGAAAAAAAAAAAUA_AAAUGCAAAGAGCGAGAA_AAGGGGAGCAAAUUUU ............................(((...(((((.(((.(((......)))....((((....))))......................))).)))))...)))........... (-11.54 = -11.66 + 0.12)
Location | 10,516,790 – 10,516,905 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.17 |
Mean single sequence MFE | -22.02 |
Consensus MFE | -15.82 |
Energy contribution | -15.95 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.14 |
Mean z-score | -1.42 |
Structure conservation index | 0.72 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10516790 115 + 22224390 AA----AAUGUAAAGAGCGAGAA-AAGGGGAGCAAAUUUUGUAGCUGGUAGGCAAAAAGCUGGCAACAAAUGAUGAAAUGCUAAAAUGCAUAUAGCAGCAAUGGAGUGGGUAUGUUUUUU ..----...............((-((((.(.((..((((..(.((((.(((((.....)))(....)..........((((......)))).)).)))).)..))))..)).).)))))) ( -21.70) >DroSim_CAF1 51866 108 + 1 AAUAUAAAUGCAAAGAGCGAGAA-AAGGGGAGCAAAUUUUGUAGUUGGUAGGCAAAAAGCUGGCAACAAAUGAUGAAAUGCUAAAAUGCAUAUAGCGGCAAGGGAGUGG----------- ........(((.....((.....-........((...(((((.((..((.........))..)).)))))...))..((((......))))...)).))).........----------- ( -17.00) >DroEre_CAF1 50352 118 + 1 AACA-AAAUGGAAAGAGCGGGAG-AAGGGGCGCAAAUUUUGUAGUUGGCAGGCAAAAAGCUGGCAACAAAUGAUGAAAUGCUAAAAUGCAUAUAGCGGCAAGGGACUGGGCAUGUUUUUU ....-......((((((((.(..-.((.(.(((....(((((.((..((.........))..)).))))).......((((......))))...))).)......))...).)))))))) ( -24.80) >DroYak_CAF1 49841 119 + 1 AGUA-AAAGGCAAAGAGAGGGAAAAAGGGGUGCAAAUUUUGCAGUUGGCGGGCAAAAAGCUGGCAACAAAUGAUGAAAUGCAAAAAUGCAUAUAGCGGCCAUGGAGUGGGUGUGGAUUUU .(((-(((.(((..................)))...)))))).((((.(.(((.....))).)))))..........(((((....)))))...(((.((((...)))).)))....... ( -24.57) >consensus AAUA_AAAUGCAAAGAGCGAGAA_AAGGGGAGCAAAUUUUGUAGUUGGCAGGCAAAAAGCUGGCAACAAAUGAUGAAAUGCUAAAAUGCAUAUAGCGGCAAGGGAGUGGGUAUGUUUUUU ................................((..((((((.((((((.(((.....))).)).............((((......)))).)))).))))))...))............ (-15.82 = -15.95 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:44 2006