Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,473,238 – 10,473,354 |
Length | 116 |
Max. P | 0.720240 |
Location | 10,473,238 – 10,473,354 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 94.54 |
Mean single sequence MFE | -30.59 |
Consensus MFE | -27.46 |
Energy contribution | -26.65 |
Covariance contribution | -0.81 |
Combinations/Pair | 1.14 |
Mean z-score | -1.63 |
Structure conservation index | 0.90 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.720240 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10473238 116 + 22224390 UUCGUGCGUGUUUCUUUUAUGUGUGUGUGUCACUGUAUGUUCCCUAUGUGGGUUGUUGUGCGAGUGUGUGGCUGAGAGAGUACUUAUUAUGUAAAGUGCUCAUCUUAUUGACAGUU ..((..((((.......))))..)).....(((((((((..(((.....)))....))))).))))(((.(.(((((((((((((........)))))))).))))).).)))... ( -32.00) >DroSec_CAF1 4125 116 + 1 UUCGUGCGUGUUCCUUUUAUGUGUGUGUGUCUCUGUAUGUUGUCUAUGUGGGUUGUUGUGCGAGUGUGUGACUGGGAGAGUACUUAUUAUGUAAAGUGCUCAUCUUAUUGACAGUU ..((..((((.......))))..))..((((((..((((.....))))..))..((..(((....)))..))(((((((((((((........)))))))).)))))..))))... ( -26.80) >DroSim_CAF1 4257 116 + 1 UUCGUGCGUGUUCCUUUUAUGUGUGUGUGUCUCUGUAUGUUGUCUAUGUGGGUUGUUGUGCGAGUGUGUGACUGGGAGAGUACUUAUUAUGUAAAGUGCUCAUCUUAUUGACAGUU ..((..((((.......))))..))..((((((..((((.....))))..))..((..(((....)))..))(((((((((((((........)))))))).)))))..))))... ( -26.80) >DroEre_CAF1 5227 116 + 1 UUCGUGCGUGUACCCAUUGUGUGUGUGUGCCUUUGUAUGUUGCCUAUGUGGGUUGUUGUGCGAGUGUGUGACUGAGAGAGUACUUAUUAUGUAAAGUGCUCAUCUUAUUGACAGUU ((((..((...((((((.......(..(((....)))..).......))))))...))..))))..(((.(.(((((((((((((........)))))))).))))).).)))... ( -36.74) >consensus UUCGUGCGUGUUCCUUUUAUGUGUGUGUGUCUCUGUAUGUUGCCUAUGUGGGUUGUUGUGCGAGUGUGUGACUGAGAGAGUACUUAUUAUGUAAAGUGCUCAUCUUAUUGACAGUU ((((..((....(((.........(..((......))..).........)))....))..))))..(((.(.(((((((((((((........)))))))).))))).).)))... (-27.46 = -26.65 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:32 2006