Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,465,427 – 10,465,519 |
Length | 92 |
Max. P | 0.619949 |
Location | 10,465,427 – 10,465,519 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 97.83 |
Mean single sequence MFE | -37.32 |
Consensus MFE | -35.38 |
Energy contribution | -35.83 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -1.65 |
Structure conservation index | 0.95 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.619949 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10465427 92 - 22224390 AGGAAGUGGCGCUGCCGGCGCCGCCGUCUCUGUCGGCGUCGCUGCCUUCCGUUGCGACUGCGGCGAGGACAUACACAUAAAUAAAAAGUCCU ((((.(((((((.....))))))).(((..(((((..(((((.((.....)).)))))..)))))..)))..................)))) ( -37.40) >DroSec_CAF1 9755 92 - 1 AGGAAGUGGCGCUGCCGACGCCGCCGUCGCUGUCGGCGUCGCUGCCAUCCGUUGCGACUGCGGCGAGGACAUACACAUAAAUAAAAAGUCCU .(((.(..(((.((((((((.((....)).)))))))).)))..)..)))(((((....))))).(((((.................))))) ( -36.13) >DroYak_CAF1 9999 92 - 1 AGGAAGUGGCGCUGCCGGCGCCGCCGUCGCUGUCGGCGUCGCUGCCUUCCGUUGCGACUGCGGCGAGGACAUACACAUAAAUAAAAAGUCCU (((.((((((((((.((((((....).))))).)))))))))).)))..((((((....))))))(((((.................))))) ( -38.43) >consensus AGGAAGUGGCGCUGCCGGCGCCGCCGUCGCUGUCGGCGUCGCUGCCUUCCGUUGCGACUGCGGCGAGGACAUACACAUAAAUAAAAAGUCCU .(((((..(((.((((((((.((....)).)))))))).)))..).))))(((((....))))).(((((.................))))) (-35.38 = -35.83 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:31 2006