Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 173,966 – 174,065 |
Length | 99 |
Max. P | 0.886592 |
Location | 173,966 – 174,065 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 75.20 |
Mean single sequence MFE | -39.91 |
Consensus MFE | -18.80 |
Energy contribution | -20.41 |
Covariance contribution | 1.62 |
Combinations/Pair | 1.43 |
Mean z-score | -2.14 |
Structure conservation index | 0.47 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.886592 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 173966 99 + 22224390 UUCUCA---AAUUCGGUAUUUUUCAGCUCUUUUUCCCUGUCCAGCUGCUCUAACUGUUCAAAUAUGUUUUUAGGAUGCGGAUGAGAGUGUGGUACAGAGGCA ......---..(((.(((((.....((((((..(((.(((((((..((.................))..)).))))).))).))))))..))))).)))... ( -19.13) >DroVir_CAF1 23476 99 + 1 UUCUUG---AGCGCCGCCUCCUCGAGCGCCUUCUCGCGAUCUAGGAGCUCCAGCUGCUCAAAUAUGUUCUUCGGAUGUGGAUGGGUGCUCGGCUUGGUCGCA ......---.(((..(((...((((((((((..(((((......((((.......))))........((....)))))))..))))))))))...)))))). ( -37.90) >DroPse_CAF1 2011 99 + 1 UUCUUG---AGGGCCGCCUCCUCGAGGGCCUUUUCCCGGUCGAGCAGCUCCAGCUGCUCAAAGAUGUUCUUCGGAUGGGGAUGUGUGCUGGGGGCGGUGGCA ......---...((((((.((((.((.(((...((((.((((((((((....)))))))...((......)).))).)))).).)).)).)))).)))))). ( -51.10) >DroGri_CAF1 3846 99 + 1 UUUUUG---AGCGCCGCCUCCUCGAGCGCCUUCUCGCGAUCCAGCAGCUCGAGCUGCUCGAAAAUGUUCUUCGGAUGCGGAUGGGAGCUCGGCUUGGUCGCA ......---.(((..(((...((((((.(((..((((.((((((((((....)))))).(((.......)))))))))))..))).))))))...)))))). ( -42.50) >DroAna_CAF1 19593 99 + 1 CUCUUGGCCAGCUC---CUGCUCCUUCUCCUUCUCCCUGUCCAGUAGCUCCAGCUGCUCGAAGAUGUUCUUCGGAUGUGGAUGGGAGUGCGGUGCUGUCGCG ......((((((.(---(.((.....(((((..(((.(((((((((((....)))))).((((.....))))))))).))).))))).)))).))))..)). ( -39.40) >DroPer_CAF1 2019 99 + 1 UUCUUG---AGGGCCGCCUCCUCGAGGGCCUUUUCCCGGUCGAGCAGCUCUAGCUGCUCAAAAAUGUUCUUCGGAUGGGGAUGUGUGCUGGGGGCGGUGGCA ......---...((((((.((((.((.((...((((((...(((((((....)))))))........((....))))))))...)).)).)))).)))))). ( -49.40) >consensus UUCUUG___AGCGCCGCCUCCUCGAGCGCCUUCUCCCGGUCCAGCAGCUCCAGCUGCUCAAAAAUGUUCUUCGGAUGCGGAUGGGAGCUCGGCGCGGUCGCA ............((.(((...((.(((((((..((((.((((((((((....))))))..............))))))))..))))))).))...))).)). (-18.80 = -20.41 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:03 2006