Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,395,883 – 10,395,982 |
Length | 99 |
Max. P | 0.857726 |
Location | 10,395,883 – 10,395,982 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 77.52 |
Mean single sequence MFE | -20.23 |
Consensus MFE | -11.55 |
Energy contribution | -13.55 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.35 |
Mean z-score | -2.14 |
Structure conservation index | 0.57 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.857726 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10395883 99 - 22224390 UCCGGGAG--CCUCGAAACAAUUUUCGGACAUUUUCCACCCAAAAAA---AAGAA-AGGAAACAACAAGCGCUUUUUAAUUAAUUUACAAAUUCUGGUU---CCUUGU ...(((((--((..(((.........(((.....))).......(((---(((..-.(....)........))))))..............))).))))---)))... ( -16.00) >DroSec_CAF1 39857 102 - 1 UCCGGGAUCUCCUCAAAACAACUUUUGGACAUUUUCCAGCCAAAAAA---AAAAAUAGGAAACAGCAAGCAGUUUUUAAUUAAUUUGCAAAUUCUUGUU---GCUCGU ..((((...((((.........((((((.(........)))))))..---......))))..(((((((.(((((.(((.....))).)))))))))))---))))). ( -19.73) >DroEre_CAF1 44589 106 - 1 UCUGGGAG--CCUCAAAACAAUUUUUGGACAUUUCCCCCCCCAAAAAAAAAACCAAAAAAGGCAGCAAGCUGCUUUUAAUUAAUUUACAAAUUCUUGUUGUUCCUUGU ...(((((--(..(((.....(((((((............)))))))..........((((((((....)))))))).................)))..))))))... ( -23.10) >DroYak_CAF1 39575 101 - 1 UCUGGGAA--GCUCGUAACAAUUUUUGGACAUUUUCCC-----AAAAAAAAAGAAAAAACAACAGCAAGCAGUUUUUAAUUAAUUUACAAACUCUUGUUGUUCCUUGC ...((((.--...........(((((((........))-----))))).............((((((((.(((((.(((.....))).)))))))))))))))))... ( -22.10) >consensus UCCGGGAG__CCUCAAAACAAUUUUUGGACAUUUUCCACCCAAAAAA___AAGAAAAAAAAACAGCAAGCAGUUUUUAAUUAAUUUACAAAUUCUUGUU___CCUUGU ...(((((....((((((....))))))....)))))...................(((.(((((((((.(((((.(((.....))).)))))))))))))).))).. (-11.55 = -13.55 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:09 2006