Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,361,167 – 10,361,276 |
Length | 109 |
Max. P | 0.685126 |
Location | 10,361,167 – 10,361,276 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 82.58 |
Mean single sequence MFE | -29.62 |
Consensus MFE | -20.05 |
Energy contribution | -20.68 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.19 |
Mean z-score | -1.76 |
Structure conservation index | 0.68 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685126 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10361167 109 - 22224390 CCCAACAUAUACUCAUCUUUGAGUCUCUUUAUUUUCCGAGUGGUCUGUAUGCUCAAAGGGCAACCAGAUAUGUGACCUGUGAGGAUGCACACCAGACACAUA---UGUACAU---- ....(((((((((((....))))).............(..((((.(((((.((((.(((...((.......))..))).)))).))))).))))..)..)))---)))....---- ( -29.10) >DroSec_CAF1 12757 102 - 1 UCU---CUUUAUGGAUAUAUGUGCAUGUAUAUUUUCCGAGUGGUCUGUAUGCUCAAAGGGCAACCAGAUAUGUGACCUGUGAGGAUGCACACCAGACACAUA---UGU-------- ...---.....((((...(((((....)))))..))))..((((.(((((.((((.(((...((.......))..))).)))).))))).))))........---...-------- ( -26.50) >DroSim_CAF1 13085 106 - 1 UCU---CUUUAUGGAUAUAUGUGCAUGUAUAUUUUCCGAGUGGUCUGUAUGCUCAAAGGGCAACCAGAUAUGUGACCUGUGAGGAUGCACACCAGACACAUA---UGUACAU---- ...---....(((.((((((((((..(........)....((((.(((((.((((.(((...((.......))..))).)))).))))).))))).))))))---))).)))---- ( -28.40) >DroEre_CAF1 16414 113 - 1 UCU---CUUUUUGGAUAUAUGUACAUGUAUAUUUCCCGAGUGCACUUUGUGCUCGAAGGGCAACCAAGUAUGUGACCUGUGAGGAUGCACACCAGACACAUACUAUGUACGUACGU ...---...........(((((((((..........((((..(.....)..))))..((....)).((((((((...((((......)))).....)))))))))))))))))... ( -34.50) >consensus UCU___CUUUAUGGAUAUAUGUGCAUGUAUAUUUUCCGAGUGGUCUGUAUGCUCAAAGGGCAACCAGAUAUGUGACCUGUGAGGAUGCACACCAGACACAUA___UGUACAU____ ...........((((...(((((....)))))..))))..((((.(((((.((((.(((...((.......))..))).)))).))))).))))...................... (-20.05 = -20.68 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:59 2006