Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,331,758 – 10,331,864 |
Length | 106 |
Max. P | 0.507623 |
Location | 10,331,758 – 10,331,864 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.25 |
Mean single sequence MFE | -27.99 |
Consensus MFE | -21.58 |
Energy contribution | -21.58 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.44 |
Structure conservation index | 0.77 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.507623 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10331758 106 - 22224390 AAUCGCUUGGAGGUGAUAUAGUACUCAAUAUAAAGUCGUACUGUCGGCUUG--------------GCGAUCCGAACUGAAAAGCUAGCCGUCGCAUAAGCGAAACAAAAACCAAACCACU ..(((((((...((((((((((((.............))))))).((((.(--------------((..((......))...)))))))))))).))))))).................. ( -29.22) >DroSec_CAF1 3555 106 - 1 AAUCGCUUGGAGGUGAUAUAGUACUCAAUAUAAAGUCGUUCUGUCGGCUUG--------------GCGAUCCGAACUGAAAAGCUAGCCGUCGCAUAAGCGAAACCAAAAGCAAACCACU ..(((((((...(((((...............((((((......))))))(--------------((........((....))...)))))))).))))))).................. ( -25.00) >DroSim_CAF1 3607 106 - 1 AAUCGCUUGGAGGUGAUAUAGUACUCAAUAUAAAGUCGUACUGUCGGCUUG--------------GCGAUCCGAACUGAAAAGCUGGCCGUCGCAUAAGCGAAACCAAAAGCAAACCACU ..(((((((...(((((..(((((.............)))))((((((((.--------------.((........))..)))))))).))))).))))))).................. ( -29.32) >DroEre_CAF1 3697 106 - 1 AAUCGCUUGACGCUAAUAUAGUACUCAAUAUAAAGUCGUAUUGUCGGCUUG--------------GCGAUCCGAACUGAAAAGCUAGCCGUCGCUUAAGCGAAACCAAUCGCAAACCACU ..((((((((.((............((((((......)))))).(((((.(--------------((..((......))...))))))))..)))))))))).................. ( -25.60) >DroYak_CAF1 3606 120 - 1 AAUCGCUUGACGCUGAUAUAGUACUCAAUAUAAAGUCGUAUUGUCGGCUUGACGAUCGGCUAUGGGCGAUCCGAACUGAAAAGCCAGCUGUCGCAUAAGCGAAACCAAAAGCAAACCACU ..(((((((..(((((((..((((.............))))))))))).((.(((.(((((...(((..((......))...)))))))))))))))))))).................. ( -30.82) >consensus AAUCGCUUGGAGGUGAUAUAGUACUCAAUAUAAAGUCGUACUGUCGGCUUG______________GCGAUCCGAACUGAAAAGCUAGCCGUCGCAUAAGCGAAACCAAAAGCAAACCACU ..(((((((.......................((((((......))))))...............(((((.....((....))......))))).))))))).................. (-21.58 = -21.58 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:52 2006