Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,294,383 – 10,294,487 |
Length | 104 |
Max. P | 0.534528 |
Location | 10,294,383 – 10,294,487 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 85.34 |
Mean single sequence MFE | -25.83 |
Consensus MFE | -18.42 |
Energy contribution | -19.87 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.09 |
Mean z-score | -1.87 |
Structure conservation index | 0.71 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534528 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10294383 104 - 22224390 ----------AUAUAGUACUGUAUACUGUAUAAAUUA-----CAGCAUGGAAAUCGACAUCUGCUGGCAAUCAACUGUUCACACAAUUGAAUCGUAUUCAAUUGACCAAACAGGAAGCU ----------((((((((.....))))))))......-----(((((((........))..)))))........(((((....(((((((((...)))))))))....)))))...... ( -23.10) >DroSec_CAF1 34857 110 - 1 ----UGCUGUAUAUAGUACUGUAUACUGUAUAAAGUA-----CUGCAUGGAAAUCGACAUCUGCUGGCAAUCAACUGUUCACACAAUUGAAUCGAAUUCAAUUGACCAAACAGGAAGCU ----((((.(((((((((.....))))))))).))))-----(((..(((...........((..((((......))))..))(((((((((...))))))))).)))..)))...... ( -24.30) >DroYak_CAF1 22397 116 - 1 UGUACACUGUAUAUAG---UGUAUACUGUAUAGAGUACAGUGCUGUAUGGAAAUCGACAUCUGCUGGCAAUCAACUGUUCACACAAUUGAAUCGGAUUCAGUUGACCAAACAGGAAGCU .((((((((....)))---)))))(((((((...))))))).((((.(((...(((((.....((((...((((.(((....))).)))).)))).....)))))))).))))...... ( -30.10) >consensus ______CUGUAUAUAGUACUGUAUACUGUAUAAAGUA_____CUGCAUGGAAAUCGACAUCUGCUGGCAAUCAACUGUUCACACAAUUGAAUCGAAUUCAAUUGACCAAACAGGAAGCU .....(((.(((((((((.....))))))))).)))........(((((........))..))).(((......(((((....(((((((((...)))))))))....)))))...))) (-18.42 = -19.87 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:32 2006