Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,208,146 – 10,208,265 |
Length | 119 |
Max. P | 0.892532 |
Location | 10,208,146 – 10,208,265 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 80.24 |
Mean single sequence MFE | -26.87 |
Consensus MFE | -19.59 |
Energy contribution | -19.26 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.12 |
Mean z-score | -1.97 |
Structure conservation index | 0.73 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.892532 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10208146 119 - 22224390 AUAAAAUUCAUAAUGCUAACUAUGCACAUGCAAUUAACAGCGUGCAUUAUGACUUGAUCCUGUGCAUAUGUAUGUAUGCACUUUCUCUCAGUGUAGUCAUGUUUAGUUACGUGGUAUAC .......(((((((((.......)).(((((........))))).)))))))..(((....((((((((....))))))))......)))(((((.((((((......))))))))))) ( -29.20) >DroSec_CAF1 4621 101 - 1 ------------AUGCAAAC---AUAAAUGCAAUUAACAUAGUGCAUUAUGGCUUGGUUUUGUGCAUA---AUGUGUGCACUUUCUCUCAGUGUAGUCAUGUUUAGUUACGUGGCUUAC ------------.((((.((---((..(((((...(((.....((......))...)))...))))).---)))).))))..........(((.((((((((......))))))))))) ( -25.30) >DroSim_CAF1 4957 101 - 1 ------------UUGCAAAC---AUAAAUGCAAUUAACAUGGUGCAUUAUGGCUUCGUUCUGUGCAUA---AUGUGUGCACUUUCUCUCAGUGUAGUCAUGUUUAGUUACGUGGCUUAC ------------(((((...---.....)))))...((((.((((((.(((....)))...)))))).---)))).((((((.......))))))(((((((......))))))).... ( -26.10) >consensus ____________AUGCAAAC___AUAAAUGCAAUUAACAUAGUGCAUUAUGGCUUGGUUCUGUGCAUA___AUGUGUGCACUUUCUCUCAGUGUAGUCAUGUUUAGUUACGUGGCUUAC .............(((..........((((((..........))))))...(((.......(((((((......)))))))........))))))(((((((......))))))).... (-19.59 = -19.26 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:58 2006