Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,205,899 – 10,205,989 |
Length | 90 |
Max. P | 0.553352 |
Location | 10,205,899 – 10,205,989 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 86.03 |
Mean single sequence MFE | -20.70 |
Consensus MFE | -14.46 |
Energy contribution | -15.02 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.15 |
Mean z-score | -1.70 |
Structure conservation index | 0.70 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.553352 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10205899 90 - 22224390 AUAAAUCAAU----CAAUCAUGGCCAACACACUGGCAUUCGAAAGUUUUGGCUAACAGCUAGUUAUGGCCGGAGCAAUUGUAAUCGAUAUUGUU ......((((----...((.((((((....((((((...(....)...((.....))))))))..))))))))...)))).............. ( -20.10) >DroSec_CAF1 2901 90 - 1 AUAAAUCAAU----CAAUCAUGGCCAACACGCUGGCAUUCGAAAGUUUUGGCUAACAUCUAGUUAUGGCCGGAGCAAUUGUAAUCGAUAUUGUU ......((((----..(((...((((......))))........((((((((((((.....))..))))))))))..........))))))).. ( -19.80) >DroSim_CAF1 2927 90 - 1 AUAAAUCAAU----CAAUCAUGGCCAACACGCUGGCAUUCGAAAGUUUUGGCUAACAUCUAGUUAUGGCCGGAGCAAUUGUAAUCGAUAUUGUU ......((((----..(((...((((......))))........((((((((((((.....))..))))))))))..........))))))).. ( -19.80) >DroEre_CAF1 3675 76 - 1 AUAAAUCAAUCAAUCAAUCAUGGCCAA------------CGAAAGUUUGGGCUAACAGCUAGUUAUGGCUGGAGCGAUUGUAAUCAAU------ ..........(((((..((.(((((.(------------(....))...))))).((((((....))))))))..)))))........------ ( -23.50) >DroYak_CAF1 3292 90 - 1 AUAAAUCAAU----CAAUCACGGCCAACACACUGGCAUUCGAAAGUUUGGGCCAACAGCUAGUUAUGGCUGGAGCAAUUGUAAUCAAUAUUGUU ......((((----...((.((((((....((((((...(....)..((......))))))))..))))))))...)))).............. ( -20.30) >consensus AUAAAUCAAU____CAAUCAUGGCCAACACACUGGCAUUCGAAAGUUUUGGCUAACAGCUAGUUAUGGCCGGAGCAAUUGUAAUCGAUAUUGUU ......................((((......))))........((((((((((((.....))..)))))))))).((((....))))...... (-14.46 = -15.02 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:56 2006