Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,171,200 – 10,171,306 |
Length | 106 |
Max. P | 0.678949 |
Location | 10,171,200 – 10,171,306 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 68.47 |
Mean single sequence MFE | -27.20 |
Consensus MFE | -15.01 |
Energy contribution | -15.07 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.07 |
Mean z-score | -1.50 |
Structure conservation index | 0.55 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678949 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10171200 106 - 22224390 CACAAGAAUGUAUUCCC-----------AUUUUGUUAAAACGAAGAAAGCAAAAGCGACUCAUUUAUGUAAAAUGCCGGUUCGGCGAUCCGGUAGCACUGCCUUUUAGUGUGACCAC .(((.(((((...((..-----------.(((((((...........)))))))..))..))))).)))....(((((...)))))....(((.((((((.....)))))).))).. ( -24.20) >DroSim_CAF1 2736 103 - 1 CACAAAUAUGUAUUCCA-----------AUUUUGUUA-AACGAAUAAAGCGAAAGCGACUCAUUUGUGUAA-AUGCCGG-UCGGCGAUCCGGUAGCACUGCCUCUUAGUGUGACCAC (((((((..((......-----------..((((((.-....))))))((....)).))..)))))))...-.((((..-..))))....(((.((((((.....)))))).))).. ( -27.80) >DroEre_CAF1 5746 111 - 1 UGAACAAAUUCGUACCCAUUUUUAAGAAAUUUCGUUGUAGCGAUGGAAGC------UGCGAAAAAGUGUAAAAUGCCGGUUCGGCGAUCUGGUAGCACUGCCUUUUAGUGUGACCAA .........(((((((((((((......((((..(((((((.......))------)))))..))))..))))))..)))...))))..((((.((((((.....)))))).)))). ( -28.70) >DroYak_CAF1 2788 111 - 1 UAAACAAAUCAUUUUCCAUUUUAAGGAAAUUUUCUUAAAACACUGAAAGC------CGGUAGAAAAAGCAAAAUGCCGGUUCGGCGAUCUGGCAGCACUACCUUUUAGUGUGACCAA ..................(((((((((....)))))))))(.((((..((------(((((............))))))))))).)...(((..((((((.....))))))..))). ( -28.10) >consensus CAAAAAAAUGUAUUCCC___________AUUUUGUUAAAACGAAGAAAGC______GACUAAAAAAUGUAAAAUGCCGGUUCGGCGAUCCGGUAGCACUGCCUUUUAGUGUGACCAA .........................................................................(((((...)))))....(((.((((((.....)))))).))).. (-15.01 = -15.07 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:48 2006