Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,163,553 – 10,163,682 |
Length | 129 |
Max. P | 0.984742 |
Location | 10,163,553 – 10,163,647 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 75.37 |
Mean single sequence MFE | -28.18 |
Consensus MFE | -19.20 |
Energy contribution | -20.64 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.05 |
Mean z-score | -1.60 |
Structure conservation index | 0.68 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842286 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10163553 94 + 22224390 CCUGCAAAAUUAGCGAGCGACCACUGU--CCACGUAUCGGCUGGCAGUAAAGUAGCCAACGGAUGCUGCAGCUGCAUCUGCAGUCACCUGCAGCAG .((((.......((.(((....((((.--(((.((....)))))))))...(((((........))))).)))))...(((((....))))))))) ( -30.90) >DroSec_CAF1 9591 96 + 1 CGUGCAAAAUUAGCGAGCAACCACUGUCCCCACGUAUCGGCUGGCAGUAAAGUAGCCAACGGAUGCUGCAGCUGCAUCUGCAGUCACCUGCAGCAG (((((.......))(.((.((.((((((.((.......))..))))))...)).))).)))..((((((((((((....))))....)))))))). ( -30.30) >DroSim_CAF1 11996 96 + 1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGUAAAGUAGCCAACGGAUGCUGCAGCUGCAUCUGCAGUCACCUGCAGCAG ...............................................................((((((((((((....))))....)))))))). ( -18.10) >DroEre_CAF1 31350 94 + 1 CCUUUGAAAUUAGCGAGCGACCACUGU--CCACGUAUCGGCUGGCUGUAAAGUAGCCAACGGAUGCUGCAACUGCAUCUGCAGUCACCUGCAGCAG ............(((.(.(((....))--)).)))(((.(.((((((.....)))))).).)))(((((((((((....)))))....)))))).. ( -31.40) >DroYak_CAF1 12511 94 + 1 CCUUAAAAAUUAGCGAACGACCACUGU--CCAAAUAUCGGUGGGCUGUAACGUAGCCAACGGAUGCUGCAGCUGCAUCUGCAGUCACCUGCAGCAG ((...................(((((.--........)))))(((((.....)))))...)).((((((((((((....))))....)))))))). ( -30.20) >consensus CCUGCAAAAUUAGCGAGCGACCACUGU__CCACGUAUCGGCUGGCAGUAAAGUAGCCAACGGAUGCUGCAGCUGCAUCUGCAGUCACCUGCAGCAG ....................................((.(.((((.........)))).).))((((((((((((....)))))....))))))). (-19.20 = -20.64 + 1.44)
Location | 10,163,553 – 10,163,647 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 75.37 |
Mean single sequence MFE | -31.40 |
Consensus MFE | -22.27 |
Energy contribution | -24.24 |
Covariance contribution | 1.97 |
Combinations/Pair | 1.08 |
Mean z-score | -1.62 |
Structure conservation index | 0.71 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.900713 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10163553 94 - 22224390 CUGCUGCAGGUGACUGCAGAUGCAGCUGCAGCAUCCGUUGGCUACUUUACUGCCAGCCGAUACGUGG--ACAGUGGUCGCUCGCUAAUUUUGCAGG ...((((((....)))))).(((((..((((((((.((((((.........)))))).))).....(--((....)))))).)).....))))).. ( -35.80) >DroSec_CAF1 9591 96 - 1 CUGCUGCAGGUGACUGCAGAUGCAGCUGCAGCAUCCGUUGGCUACUUUACUGCCAGCCGAUACGUGGGGACAGUGGUUGCUCGCUAAUUUUGCACG ...((((((....))))))..(((((..(.(.(((.((((((.........)))))).))).).((....)))..)))))..((.......))... ( -39.70) >DroSim_CAF1 11996 96 - 1 CUGCUGCAGGUGACUGCAGAUGCAGCUGCAGCAUCCGUUGGCUACUUUACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN .((((((((....((((....))))))))))))............................................................... ( -17.70) >DroEre_CAF1 31350 94 - 1 CUGCUGCAGGUGACUGCAGAUGCAGUUGCAGCAUCCGUUGGCUACUUUACAGCCAGCCGAUACGUGG--ACAGUGGUCGCUCGCUAAUUUCAAAGG ...((((((....)))))).((.((((((((((((.(((((((.......))))))).))).....(--((....)))))).)).)))).)).... ( -34.40) >DroYak_CAF1 12511 94 - 1 CUGCUGCAGGUGACUGCAGAUGCAGCUGCAGCAUCCGUUGGCUACGUUACAGCCCACCGAUAUUUGG--ACAGUGGUCGUUCGCUAAUUUUUAAGG .((((((((....((((....))))))))))))...((((((.(((((((.(.(((........)))--.).)))).)))..))))))........ ( -29.40) >consensus CUGCUGCAGGUGACUGCAGAUGCAGCUGCAGCAUCCGUUGGCUACUUUACAGCCAGCCGAUACGUGG__ACAGUGGUCGCUCGCUAAUUUUGAAGG ..(((((((....((((....)))))))))))(((.((((((.........)))))).)))..........(((((....)))))........... (-22.27 = -24.24 + 1.97)
Location | 10,163,590 – 10,163,682 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 91.28 |
Mean single sequence MFE | -30.92 |
Consensus MFE | -24.60 |
Energy contribution | -25.60 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.49 |
Structure conservation index | 0.80 |
SVM decision value | 1.98 |
SVM RNA-class probability | 0.984742 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10163590 92 + 22224390 GCUGGCAGUAAAGUAGCCAACGGAUGCUGCAGCUGCAUCUGCAGUCACCUGCAGCAGGUGUAGCCUUGAACACAA-ACACAAACG---GCCAAAUA- ..((((.((...(((((........))))).(((((((((((.((.....)).)))))))))))...........-......)).---))))....- ( -31.40) >DroSec_CAF1 9630 92 + 1 GCUGGCAGUAAAGUAGCCAACGGAUGCUGCAGCUGCAUCUGCAGUCACCUGCAGCAGGUGUAGCCUUGAACACAA-ACACGAACG---GCCAAACA- ..((((.((...(((((........))))).(((((((((((.((.....)).)))))))))))...........-......)).---))))....- ( -31.40) >DroSim_CAF1 12035 92 + 1 NNNNNNNGUAAAGUAGCCAACGGAUGCUGCAGCUGCAUCUGCAGUCACCUGCAGCAGGUGUAGCCUUGAACACAA-ACACGAACG---GCCAAACA- ...............(((......((((((((((((....))))....)))))))).((((........))))..-........)---))......- ( -26.30) >DroEre_CAF1 31387 96 + 1 GCUGGCUGUAAAGUAGCCAACGGAUGCUGCAACUGCAUCUGCAGUCACCUGCAGCAGGUGUAGCCUUGAACACAA-ACACGAACGGCGGCCAAACAG ..(((((((...((..........((((((((((((....)))))....))))))).((((........))))..-......)).)))))))..... ( -32.40) >DroYak_CAF1 12548 93 + 1 GUGGGCUGUAACGUAGCCAACGGAUGCUGCAGCUGCAUCUGCAGUCACCUGCAGCAGGUGUAGCCUUGAACACAAAACACGAAUG---UCCAAACA- ((.(((((.....))))).))((((((((((.((((...(((((....))))))))).)))))).(((....))).........)---))).....- ( -33.10) >consensus GCUGGCAGUAAAGUAGCCAACGGAUGCUGCAGCUGCAUCUGCAGUCACCUGCAGCAGGUGUAGCCUUGAACACAA_ACACGAACG___GCCAAACA_ ...(((......(((((........))))).(((((((((((.((.....)).)))))))))))........................)))...... (-24.60 = -25.60 + 1.00)
Location | 10,163,590 – 10,163,682 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 91.28 |
Mean single sequence MFE | -31.40 |
Consensus MFE | -24.36 |
Energy contribution | -25.48 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.54 |
Structure conservation index | 0.78 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.600292 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10163590 92 - 22224390 -UAUUUGGC---CGUUUGUGU-UUGUGUUCAAGGCUACACCUGCUGCAGGUGACUGCAGAUGCAGCUGCAGCAUCCGUUGGCUACUUUACUGCCAGC -....((((---(.....((.-.......)).)))))....((((((((....((((....))))))))))))...((((((.........)))))) ( -31.00) >DroSec_CAF1 9630 92 - 1 -UGUUUGGC---CGUUCGUGU-UUGUGUUCAAGGCUACACCUGCUGCAGGUGACUGCAGAUGCAGCUGCAGCAUCCGUUGGCUACUUUACUGCCAGC -.((.((((---(.....((.-.......)).))))).)).((((((((....((((....))))))))))))...((((((.........)))))) ( -32.10) >DroSim_CAF1 12035 92 - 1 -UGUUUGGC---CGUUCGUGU-UUGUGUUCAAGGCUACACCUGCUGCAGGUGACUGCAGAUGCAGCUGCAGCAUCCGUUGGCUACUUUACNNNNNNN -....((((---((..((.(.-..(((((...((((.((....((((((....)))))).)).))))..)))))))).))))))............. ( -28.90) >DroEre_CAF1 31387 96 - 1 CUGUUUGGCCGCCGUUCGUGU-UUGUGUUCAAGGCUACACCUGCUGCAGGUGACUGCAGAUGCAGUUGCAGCAUCCGUUGGCUACUUUACAGCCAGC ...((((..(((.........-..)))..))))(((.((.(((((((((....)))))...)))).)).)))....(((((((.......))))))) ( -32.90) >DroYak_CAF1 12548 93 - 1 -UGUUUGGA---CAUUCGUGUUUUGUGUUCAAGGCUACACCUGCUGCAGGUGACUGCAGAUGCAGCUGCAGCAUCCGUUGGCUACGUUACAGCCCAC -..((((((---(((.........)))))))))(((.((.(((((((((....)))))...)))).)).)))....((.((((.......)))).)) ( -32.10) >consensus _UGUUUGGC___CGUUCGUGU_UUGUGUUCAAGGCUACACCUGCUGCAGGUGACUGCAGAUGCAGCUGCAGCAUCCGUUGGCUACUUUACAGCCAGC ......((.........((((.(((....)))....)))).((((((((....((((....)))))))))))).))((((((.........)))))) (-24.36 = -25.48 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:37 2006