Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,015,651 – 10,015,769 |
Length | 118 |
Max. P | 0.500000 |
Location | 10,015,651 – 10,015,769 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.94 |
Mean single sequence MFE | -34.50 |
Consensus MFE | -26.59 |
Energy contribution | -27.90 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.03 |
Mean z-score | -1.38 |
Structure conservation index | 0.77 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10015651 118 + 22224390 UUGGGUGCUGUAAUUGAGGCAACUUUGCA--GAAAGGCAAAACUUGCCGCAUGUACGAAUAGUUUGCUGCAUAAUGACAGGCGCGCCGGCAUGCAUAUUUAUGCCUCAAAAACUCAACUU ((((((.......((((((((........--....((((.....))))((((((.((....((((((........).))))).))...)))))).......))))))))..))))))... ( -35.20) >DroAna_CAF1 16036 111 + 1 UCGGGGGCUGUAAUUGAGGAAAGUUUGGAAGGAAAGGCACAAGUUGCCGCAUGUACGAAUAGUUUGCUGCAUAAUGACAGGAGCGCCGGCAUGCAUAUUUAUGCCCCACG---------C .(((((((.((((.((...................((((.....))))((((((.((....((((.((((.....).)))))))..)))))))).)).))))))))).))---------. ( -31.50) >DroEre_CAF1 23088 118 + 1 UUGGGUGCUGUAAUUGAGGCAACUUUGCA--GGAAGGCAAAAGUUGCUGCAUGUACGAAUAGUUUGCUGCAUAAUGACAGGCGCGCCGGCUUGCAUAUUUAUGCCUCAAAAACUCAACUU ((((((..((((..((.(((((((((((.--.....)).))))))))).))..)))).....((((..((((((((.(((((......))))))))...)))))..)))).))))))... ( -35.20) >DroYak_CAF1 19217 118 + 1 UUGGGUGCUGUAAUUGAGGCAAGUUUGCA--GAAAGGCAAAAGUUGCCGCAUGUACGAAUAGUUUGCUGCAUAAUGACAGGCGCGCCGGCAUGCAUAUUUAUGCCUCAAAAACUCAACUU ((((((((((((..((.(((((.(((((.--.....)))))..))))).))..))))....((((((........).))))))))))((((((......)))))).)))........... ( -36.10) >consensus UUGGGUGCUGUAAUUGAGGCAACUUUGCA__GAAAGGCAAAAGUUGCCGCAUGUACGAAUAGUUUGCUGCAUAAUGACAGGCGCGCCGGCAUGCAUAUUUAUGCCUCAAAAACUCAACUU ...(((((((((..((.(((((.(((((........)))))..))))).))..))))....((((((........).))))))))))((((((......))))))............... (-26.59 = -27.90 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:17 2006