Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,008,626 – 10,008,733 |
Length | 107 |
Max. P | 0.500000 |
Location | 10,008,626 – 10,008,733 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 84.36 |
Mean single sequence MFE | -30.53 |
Consensus MFE | -17.62 |
Energy contribution | -18.31 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.12 |
Mean z-score | -2.05 |
Structure conservation index | 0.58 |
SVM decision value | -0.08 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10008626 107 - 22224390 UGUUUUACAGCU--UAUCA----AGUAUUAUGCACAGUGCAUUGCUGGCAUAUA-GG-CUGAAAUGCACUGCUGGCUAAUUAAGCUGAGUGAGUAAGGACAAUUUCGGAUGACAA ((((((...(((--(((..----(((((((.((.(((((((((..((((.....-.)-))).)))))))))...))))))...)))..)))))).)))))).............. ( -28.80) >DroSec_CAF1 14099 106 - 1 -GUUUUAAGGCU--UAUCA----AGUAUUAUUCACAGUGCAUUGCUGGCAUAUA-GG-CUGAAAUGCACUGCUGGCUAAUUAAGCUGAGUGAGUAAGGACAAUUUCGGAUGACAA -(((((...(((--(((..----(((((((..(((((((((((..((((.....-.)-))).))))))))).))..))))...)))..)))))).)))))............... ( -29.50) >DroEre_CAF1 14643 112 - 1 -GUUUUACAGCU--UAUCACCCCACAAUUCUUCGCAGUGCAUUGCUGUCAUAUGAGACCUGGCAUGCACUGCUGGGUAAUUAAGCUGAGUGAGUAUGGACAAUUUCGGAUGACAA -......(((((--((....((((.........(((((((((.((((((......)))..))))))))))))))))....))))))).((.(...((((....))))..).)).. ( -36.10) >DroYak_CAF1 11421 109 - 1 -UUUUAACAGCAAGUAUUA----AGUAUUAUUCACAGUGCAUUGCUGUCAUAUG-GCCCUCAAAUGCACUGCCGGCUAAUUAAGCCAAGUGAGUAAGGACCAUUUUGGAUGACAA -......((.((((.....----.((.((((((((((((((((...(((....)-)).....))))))))...((((.....))))..))))))))..))...))))..)).... ( -27.70) >consensus _GUUUUACAGCU__UAUCA____AGUAUUAUUCACAGUGCAUUGCUGGCAUAUA_GG_CUGAAAUGCACUGCUGGCUAAUUAAGCUGAGUGAGUAAGGACAAUUUCGGAUGACAA ..............((((.........((((((((((((((((...................))))))))...((((.....))))..))))))))...........)))).... (-17.62 = -18.31 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:12 2006