Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,005,990 – 10,006,098 |
Length | 108 |
Max. P | 0.631651 |
Location | 10,005,990 – 10,006,098 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 88.94 |
Mean single sequence MFE | -29.25 |
Consensus MFE | -19.79 |
Energy contribution | -20.60 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.14 |
Mean z-score | -2.06 |
Structure conservation index | 0.68 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.631651 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10005990 108 + 22224390 CGAAUGUGUCUCUUUUUGAGUGGCAAGGGGGCAUAUACCAUAACUUGUUGCACCAACGAUAUUUUGCCACUUUAUCAUUCAGAUGAGAUGCGUUUACACUUUAAAUAG .(((((((((((..((((((((..((((.((((.(((.......((((((...)))))))))..)))).))))..)))))))).)))))))))))............. ( -33.41) >DroSec_CAF1 11517 106 + 1 CGAAUGUGUCUCUUUUCUGGUGGCAAGGGGGCAU--CCCAUAACUUGUUGCACCAACGAUAUUUAGCCACUUUAUCAUCCCGAUGAGAUGCGUUUACACUUUAAAUAG .(((((((((((......((((((..(((.....--))).....((((((...))))))......))))))..(((.....))))))))))))))............. ( -29.10) >DroEre_CAF1 12083 103 + 1 CGAAUGUGUCACCUUUCGGU-GGCAAGG--GACU--GCCAUAACUUGUUGCACCAUCGAUGUUUAGCCACUUUAUCAUACCGAUGAGAUGCGUUUACACUUUAAAUAG (((..((((.((......((-((((...--...)--))))).....)).))))..))).(((..(((((.((((((.....)))))).)).))).))).......... ( -22.40) >DroYak_CAF1 8715 106 + 1 UGAAUGUGUCUCUUUUCGGUUGGCAAGGUGGCAU--CCCAUAACUUGUUGCACCGUCGAUAUUUAGCCACUUUAUCAUCCCGAUGAGAUGCGUUUACACUUUAAAUAG ((((((((((((...((((.((..((((((((..--....(((..(((((......))))).)))))))))))..))..)))).))))))))))))............ ( -32.10) >consensus CGAAUGUGUCUCUUUUCGGGUGGCAAGGGGGCAU__CCCAUAACUUGUUGCACCAACGAUAUUUAGCCACUUUAUCAUCCCGAUGAGAUGCGUUUACACUUUAAAUAG .(((((((((((...(((((.((((((..((......))....))))))........((((...........))))..))))).)))))))))))............. (-19.79 = -20.60 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:06 2006