Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,974,279 – 9,974,401 |
Length | 122 |
Max. P | 0.956110 |
Location | 9,974,279 – 9,974,383 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 83.71 |
Mean single sequence MFE | -25.98 |
Consensus MFE | -21.32 |
Energy contribution | -21.68 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.05 |
Mean z-score | -1.67 |
Structure conservation index | 0.82 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.712506 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9974279 104 + 22224390 CGUUUCCCGAGAUCGUUUUUUAUGCAUUUAUUAAUUGCGAACGUCCGCAAAGCCAAUUAACUUGGCCAAGGACCAUUUUC------AUUUUCGCUGCAUACUCUCGGGCA- .....(((((((........((((((..........(((((.((((.....(((((.....)))))...)))).......------...))))))))))).)))))))..- ( -27.10) >DroSec_CAF1 19650 104 + 1 CGCUGUCCGAGAUCGUUUUUUAUGCAUUUAUUAAUUGCGAACGUCCGCAAAGCCAAUUAACUUGGCCAAGGACCAUUUUC------AUUUUCGCUGCAUACUCUCGGGCA- ....((((((((........((((((..........(((((.((((.....(((((.....)))))...)))).......------...))))))))))).)))))))).- ( -29.00) >DroEre_CAF1 6966 110 + 1 CGUUAACCGAGAUCGUUUUUUAUGCAUUUAUUAAUUGCGAACGUCCGCAGAGCCAAUUAACUUGGCCAGGGACCAUUUUCAUUUUCAUUUUCGCUGCAUACUCUCGGGCA- ......((((((.(((((.....(((.........))))))))...((((.(((((.....)))))..(..(....)..).............))))....))))))...- ( -24.90) >DroYak_CAF1 7217 104 + 1 CGUUAACCGAGAUCGUUUUUUAUGCAUUUAUUAAUUGCGAACGUCCGCAAAGCCAAUUAACUUGGCCAAGGACCAUUUUC------AUUUUCGCUGCAUACUCUCGGGCA- ......((((((........((((((..........(((((.((((.....(((((.....)))))...)))).......------...))))))))))).))))))...- ( -25.10) >DroAna_CAF1 9695 95 + 1 CGUCCGCCGAC----UGCUCUCUGCAUUUAUUAAUUGCGCCACUCCGCAGAGCCAAUUAACUUGGCCGGGAAACAAU------------UCCGUCGCAUACUCUCGGGCCU .(((((((((.----(((.....)))....(((((((.(((........).))))))))).)))))(((((.....)------------))))............)))).. ( -23.80) >consensus CGUUAACCGAGAUCGUUUUUUAUGCAUUUAUUAAUUGCGAACGUCCGCAAAGCCAAUUAACUUGGCCAAGGACCAUUUUC______AUUUUCGCUGCAUACUCUCGGGCA_ ......((((((........(((((.........(((((......))))).(((((.....))))).............................))))).)))))).... (-21.32 = -21.68 + 0.36)
Location | 9,974,279 – 9,974,383 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 83.71 |
Mean single sequence MFE | -31.46 |
Consensus MFE | -23.98 |
Energy contribution | -24.42 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.05 |
Mean z-score | -2.34 |
Structure conservation index | 0.76 |
SVM decision value | 1.46 |
SVM RNA-class probability | 0.956110 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9974279 104 - 22224390 -UGCCCGAGAGUAUGCAGCGAAAAU------GAAAAUGGUCCUUGGCCAAGUUAAUUGGCUUUGCGGACGUUCGCAAUUAAUAAAUGCAUAAAAAACGAUCUCGGGAAACG -..(((((((.(((((((((((.((------....)).((((..((((((.....))))))....)))).)))))..........))))))........)))))))..... ( -35.00) >DroSec_CAF1 19650 104 - 1 -UGCCCGAGAGUAUGCAGCGAAAAU------GAAAAUGGUCCUUGGCCAAGUUAAUUGGCUUUGCGGACGUUCGCAAUUAAUAAAUGCAUAAAAAACGAUCUCGGACAGCG -((.((((((.(((((((((((.((------....)).((((..((((((.....))))))....)))).)))))..........))))))........)))))).))... ( -32.40) >DroEre_CAF1 6966 110 - 1 -UGCCCGAGAGUAUGCAGCGAAAAUGAAAAUGAAAAUGGUCCCUGGCCAAGUUAAUUGGCUCUGCGGACGUUCGCAAUUAAUAAAUGCAUAAAAAACGAUCUCGGUUAACG -...((((((.(((((((((((.((....)).......(((((.((((((.....))))))..).)))).)))))..........))))))........))))))...... ( -31.70) >DroYak_CAF1 7217 104 - 1 -UGCCCGAGAGUAUGCAGCGAAAAU------GAAAAUGGUCCUUGGCCAAGUUAAUUGGCUUUGCGGACGUUCGCAAUUAAUAAAUGCAUAAAAAACGAUCUCGGUUAACG -...((((((.(((((((((((.((------....)).((((..((((((.....))))))....)))).)))))..........))))))........))))))...... ( -31.30) >DroAna_CAF1 9695 95 - 1 AGGCCCGAGAGUAUGCGACGGA------------AUUGUUUCCCGGCCAAGUUAAUUGGCUCUGCGGAGUGGCGCAAUUAAUAAAUGCAGAGAGCA----GUCGGCGGACG .(((((....)........(((------------(....)))).))))..((..((((.(((((((.(((......)))......)))))))..))----))..))..... ( -26.90) >consensus _UGCCCGAGAGUAUGCAGCGAAAAU______GAAAAUGGUCCUUGGCCAAGUUAAUUGGCUUUGCGGACGUUCGCAAUUAAUAAAUGCAUAAAAAACGAUCUCGGUUAACG ....((((((.((((((...........................((((((.....)))))).((((......)))).........))))))........))))))...... (-23.98 = -24.42 + 0.44)
Location | 9,974,310 – 9,974,401 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 94.15 |
Mean single sequence MFE | -26.50 |
Consensus MFE | -22.92 |
Energy contribution | -22.93 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.73 |
Structure conservation index | 0.86 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.732250 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9974310 91 - 22224390 UUUUUAUUUUUCCCCAGCUGCCCGAGAGUAUGCAGCGAAAAU------GAAAAUGGUCCUUGGCCAAGUUAAUUGGCUUUGCGGACGUUCGCAAUUA (((((((((((.....(((((.(....)...)))))))))))------)))))..((((..((((((.....))))))....))))........... ( -26.50) >DroSec_CAF1 19681 91 - 1 CUUUUAUUUUUCCCCAGCUGCCCGAGAGUAUGCAGCGAAAAU------GAAAAUGGUCCUUGGCCAAGUUAAUUGGCUUUGCGGACGUUCGCAAUUA .((((((((((.....(((((.(....)...)))))))))))------))))...((((..((((((.....))))))....))))........... ( -25.90) >DroEre_CAF1 6997 96 - 1 -UUUUAUUUUACCCCAGCUGCCCGAGAGUAUGCAGCGAAAAUGAAAAUGAAAAUGGUCCCUGGCCAAGUUAAUUGGCUCUGCGGACGUUCGCAAUUA -(((((((((......(((((.(....)...))))).......)))))))))...(((((.((((((.....))))))..).))))........... ( -27.62) >DroYak_CAF1 7248 91 - 1 GUUUUAUUUUUCCCCAGCUGCCCGAGAGUAUGCAGCGAAAAU------GAAAAUGGUCCUUGGCCAAGUUAAUUGGCUUUGCGGACGUUCGCAAUUA .((((((((((.....(((((.(....)...)))))))))))------))))...((((..((((((.....))))))....))))........... ( -26.00) >consensus _UUUUAUUUUUCCCCAGCUGCCCGAGAGUAUGCAGCGAAAAU______GAAAAUGGUCCUUGGCCAAGUUAAUUGGCUUUGCGGACGUUCGCAAUUA ................(((((.(....)...)))))............(((....((((..((((((.....))))))....)))).)))....... (-22.92 = -22.93 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:51 2006