Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,959,140 – 9,959,256 |
Length | 116 |
Max. P | 0.816465 |
Location | 9,959,140 – 9,959,256 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 97.13 |
Mean single sequence MFE | -27.99 |
Consensus MFE | -26.50 |
Energy contribution | -26.83 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.96 |
Structure conservation index | 0.95 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.816465 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9959140 116 - 22224390 UGCUUCAAACUAAAAGCCAAGCGCUGUAAUCAUAUUUAACUUUGGCUCGGUUAUGUGCCUCAUCUUCUGCAGCCGCAGCCUCAUCUCUCCUUCACCUGAUUUUGGUUGCUGCUGCU .((..((((((...(((((((.(...(((......))).)))))))).)))).)).))..........(((((.((((((..(((............)))...)))))).))))). ( -29.80) >DroSim_CAF1 8822 116 - 1 UGCUUCAAACUAAAAGCCAAGCGCUGUAAUCAUAUUUAACUUUGCCUCGGUUAUGUGCCUCAUCUUCUGCAGCCGCAGCCUCAUCUCUCCUUCACCUGAUUUUGGUUGAUGCUGCU .((((........))))...((((.((((((.................))))))))))..........(((((..(((((..(((............)))...)))))..))))). ( -24.83) >DroEre_CAF1 21729 115 - 1 UGCUUCAAACUAAAAGCCAAGCGCUGUAAUCAUAUUUAACUUUGCCUCGGUUAUGUGCCUCAUCUUCUGCAGCCGCAGCCGCAUCUCUCCUUCACCUGAUUUCGGUUGCUGCUGC- .((((........))))...((((.((((((.................))))))))))..........(((((.(((((((.(((............)))..))))))).)))))- ( -29.33) >consensus UGCUUCAAACUAAAAGCCAAGCGCUGUAAUCAUAUUUAACUUUGCCUCGGUUAUGUGCCUCAUCUUCUGCAGCCGCAGCCUCAUCUCUCCUUCACCUGAUUUUGGUUGCUGCUGCU .((((........))))...((((.((((((.................))))))))))..........(((((.((((((..(((............)))...)))))).))))). (-26.50 = -26.83 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:31 2006